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Bohnacker S, Henkel FDR, Hartung F, Geerlof A, Riemer S, Prodjinotho UF, Salah EB, Mourão ASD, Bohn S, Teder T, Thomas D, Gurke R, Boeckel C, Ud-Dean M, König AC, Quaranta A, Alessandrini F, Lechner A, Spitzlberger B, Kabat AM, Pearce E, Haeggström JZ, Hauck SM, Wheelock CE, Jakobsson PJ, Sattler M, Voehringer D, Feige MJ, da Costa CP, Bieren JE (2024)
A helminth enzyme subverts macrophage-mediated immunity by epigenetic targeting of prostaglandin synthesis.
Science immunology, Issue 102, Vol. 9, eadl1467
DOI: 10.1126/sciimmunol.adl1467, PubMed: 39642243

Liu N, O'Connor P, Gujrati V, Anzenhofer P, Klemm U, Kleigrewe K, Sattler M, Plettenburg O, Ntziachristos V (2022)
Multifunctional croconaine nanoparticles for efficient optoacoustic imaging of deep tumors and photothermal therapy.
Nanophotonics (Berlin, Germany), Issue 21, Vol. 11, 4637-4647
DOI: 10.1515/nanoph-2022-0469, PubMed: 39634732

Niedner-Boblenz A, Monecke T, Hennig J, Klostermann M, Hofweber M, Davydova E, Gerber AP, Anosova I, Mayer W, Müller M, Heym RG, Janowski R, Paillart JC, Dormann D, Zarnack K, Sattler M, Niessing D (2024)
Intrinsically disordered RNA-binding motifs cooperate to catalyze RNA folding and drive phase separation.
Nucleic acids research
DOI: 10.1093/nar/gkae1107, PubMed: 39558160

Chin Sang C, Moore G, Tereshchenko M, Zhang H, Nosella ML, Dasovich M, Alderson TR, Leung AKL, Finkelstein IJ, Forman-Kay JD, Lee HO (2024)
PARP1 condensates differentially partition DNA repair proteins and enhance DNA ligation.
EMBO reports
DOI: 10.1038/s44319-024-00285-5, PubMed: 39496836

Han Z, Xia Z, Xia J, Tetko IV, Wu S (2024)
The state-of-the-art machine learning model for Plasma Protein Binding Prediction: computational modeling with OCHEM and experimental validation.
European journal of pharmaceutical sciences : official journal of the European Federation for Pharmaceutical Sciences, 106946
DOI: 10.1016/j.ejps.2024.106946, PubMed: 39490636

Santovito D, Henderson JM, Bidzhekov K, Triantafyllidou V, Jansen Y, Chen Z, Farina FM, Diagel A, Aslani M, Blanchet X, Schunkert H, Megens RTA, Döring Y, Sattler M, Weber C (2024)
Mex3a Protects Against Atherosclerosis: Evidence From Mice and Humans.
Circulation, Issue 15, Vol. 150, 1213-1216
DOI: 10.1161/CIRCULATIONAHA.124.069526, PubMed: 39374329

Kellner M, Hörmann J, Fackler S, Hu Y, Zhou T, Lu L, Ilik I, Aktas T, Feederle R, Hauck SM, Gires O, Gärtner K, Li L, Zeidler R (2024)
The Nuclear Speckles Protein SRRM2 Is Exposed on the Surface of Cancer Cells.
Cells, Issue 18, Vol. 13
DOI: 10.3390/cells13181563, PubMed: 39329747

Banasik M, Napolitano V, Blat A, Abdulkarim K, Plewka J, Czaplewski C, Gieldon A, Kozak M, Wladyka B, Popowicz G, Dubin G (2024)
Structural dynamics of the TPR domain of the peroxisomal cargo receptor Pex5 in Trypanosoma.
International journal of biological macromolecules, Issue Pt 4, Vol. 280, 135510
DOI: 10.1016/j.ijbiomac.2024.135510, PubMed: 39304044

Freisem D, Rodriguez-Alfonso AA, Lawrenz J, Zhou Z, Monecke T, Preising N, Endres S, Wiese S, Ständker L, Kuan SL, Thal DR, Weil T, Niessing D, Barth H, Kirchhoff F, Harms M, Münch J, Sparrer KMJ (2024)
A naturally occurring 22-amino acid fragment of human hemoglobin A inhibits autophagy and HIV-1.
Cellular and molecular life sciences : CMLS, Issue 1, Vol. 81, 409
DOI: 10.1007/s00018-024-05447-1, PubMed: 39289189

Bussi G, Bonomi M, Gkeka P, Sattler M, Al-Hashimi HM, Auffinger P, Duca M, Foricher Y, Incarnato D, Jones AN, Kirmizialtin S, Krepl M, Orozco M, Palermo G, Pasquali S, Salmon L, Schwalbe H, Westhof E, Zacharias M (2024)
RNA dynamics from experimental and computational approaches.
Structure (London, England : 1993), Issue 9, Vol. 32, 1281-1287
DOI: 10.1016/j.str.2024.07.019, PubMed: 39241758

Kogut-Günthel MM, Zara Z, Nicoli A, Steuer A, Lopez-Balastegui M, Selent J, Karanth S, Koehler M, Ciancetta A, Abiko LA, Hagn F, Di Pizio A (2024)
The path to the G protein-coupled receptor structural landscape: Major milestones and future directions.
British journal of pharmacology
DOI: 10.1111/bph.17314, PubMed: 39209310

Martínez-Lumbreras S, Morguet C, Sattler M (2024)
Dynamic interactions drive early spliceosome assembly.
Current opinion in structural biology, Vol. 88, 102907
DOI: 10.1016/j.sbi.2024.102907, PubMed: 39168044

Hildebrand MS, Braden RO, Lauretta ML, Kaspi A, Leventer RJ, Anderson M, Goel H, Bahlo M, Scheffer IE, Amor DJ, Janowski R, Niessing D, Morgan AT (2024)
Inherited PURA Pathogenic Variant Associated With a Mild Neurodevelopmental Disorder.
Neurology. Genetics, Issue 5, Vol. 10, e200181
DOI: 10.1212/NXG.0000000000200181, PubMed: 39131487

Rodina N, Sarkar R, Tsakalos D, Suladze S, Niu Z, Reif B (2024)
Manual and automatic assignment of two different Aβ40 amyloid fibril polymorphs using MAS solid-state NMR spectroscopy.
Biomolecular NMR assignments, Issue 2, Vol. 18, 201-212
DOI: 10.1007/s12104-024-10189-z, PubMed: 39120652

Xu M, Ito-Kureha T, Kang HS, Chernev A, Raj T, Hoefig KP, Hohn C, Giesert F, Wang Y, Pan W, Ziętara N, Straub T, Feederle R, Daniel C, Adler B, König J, Feske S, Tsokos GC, Wurst W, Urlaub H, Sattler M, Kisielow J, Wulczyn FG, Łyszkiewicz M, Heissmeyer V (2024)
Correction to "The thymocyte-specific RNA-binding protein Arpp21 provides TCR repertoire diversity by binding to the 3'-UTR and promoting Rag1 mRNA expression".
Nature communications, Issue 1, Vol. 15, 6632
DOI: 10.1038/s41467-024-50610-8, PubMed: 39103338

Leitl KD, Sperl LE, Hagn F (2024)
Preferred inhibition of pro-apoptotic Bak by BclxL via a two-step mechanism.
Cell reports, Issue 8, Vol. 43, 114526
DOI: 10.1016/j.celrep.2024.114526, PubMed: 39046879

Lis K, Plewka J, Menezes F, Bielecka E, Chykunova Y, Pustelny K, Niebling S, Garcia AS, Garcia-Alai M, Popowicz GM, Nowak JS, Czarna A, Kantyka T, Pyrc K (2024)
Corrigendum to "SARS-CoV-2 Mpro oligomerization as a potential target for therapy" [Int. J. Biol. Macromol. 267 (Part 1) (May 2024) 131392].
International journal of biological macromolecules, Issue Pt 1, Vol. 276, 133473
DOI: 10.1016/j.ijbiomac.2024.133473, PubMed: 39024924

Rodina N, Hornung S, Sarkar R, Suladze S, Peters C, Schmid PWN, Niu Z, Haslbeck M, Buchner J, Kapurniotu A, Reif B (2024)
Modulation of Alzheimer's Disease Aβ40 Fibril Polymorphism by the Small Heat Shock Protein αB-Crystallin.
Journal of the American Chemical Society, Issue 28, Vol. 146, 19077-19087
DOI: 10.1021/jacs.4c03504, PubMed: 38973199

Kohantorabi M, Ugolotti A, Sochor B, Roessler J, Wagstaffe M, Meinhardt A, Beck EE, Dolling DS, Garcia MB, Creutzburg M, Keller TF, Schwartzkopf M, Vayalil SK, Thuenauer R, Guédez G, Löw C, Ebert G, Protzer U, Hammerschmidt W, Zeidler R, Roth SV, Di Valentin C, Stierle A, Noei H (2024)
Light-Induced Transformation of Virus-Like Particles on TiO2.
ACS applied materials & interfaces, Issue 28, Vol. 16, 37275-37287
DOI: 10.1021/acsami.4c07151, PubMed: 38959130

McCalpin SD, Khemtemourian L, Suladze S, Ivanova MI, Reif B, Ramamoorthy A (2024)
Zinc and pH modulate the ability of insulin to inhibit aggregation of islet amyloid polypeptide.
Communications biology, Issue 1, Vol. 7, 776
DOI: 10.1038/s42003-024-06388-y, PubMed: 38937578

Liu N, O'Connor P, Gujrati V, Shelar D, Ma X, Anzenhofer P, Klemm U, Su X, Huang Y, Kleigrewe K, Feuchtinger A, Walch A, Sattler M, Plettenburg O, Ntziachristos V (2024)
Tuning the photophysical properties of cyanine by barbiturate functionalization and nanoformulation for efficient optoacoustics- guided phototherapy.
Journal of controlled release : official journal of the Controlled Release Society, Vol. 372, 522-530
DOI: 10.1016/j.jconrel.2024.06.037, PubMed: 38897293

Niu Z, Gui X, Feng S, Reif B (2024)
Aggregation Mechanisms and Molecular Structures of Amyloid-β in Alzheimer's Disease.
Chemistry (Weinheim an der Bergstrasse, Germany), Issue 48, Vol. 30, e202400277
DOI: 10.1002/chem.202400277, PubMed: 38888453

Suladze S, Sarkar R, Rodina N, Bokvist K, Krewinkel M, Scheps D, Nagel N, Bardiaux B, Reif B (2024)
Atomic resolution structure of full-length human insulin fibrils.
Proceedings of the National Academy of Sciences of the United States of America, Issue 23, Vol. 121, e2401458121
DOI: 10.1073/pnas.2401458121, PubMed: 38809711

Daniilidis M, Sperl LE, Müller BS, Babl A, Hagn F (2024)
Efficient Segmental Isotope Labeling of Integral Membrane Proteins for High-Resolution NMR Studies.
Journal of the American Chemical Society, Issue 22, Vol. 146, 15403-15410
DOI: 10.1021/jacs.4c03294, PubMed: 38787792

Tetko IV (2024)
Tox24 Challenge.
Chemical research in toxicology, Issue 6, Vol. 37, 825-826
DOI: 10.1021/acs.chemrestox.4c00192, PubMed: 38769907

Siebenmorgen T, Menezes F, Benassou S, Merdivan E, Didi K, Mourão ASD, Kitel R, Liò P, Kesselheim S, Piraud M, Theis FJ, Sattler M, Popowicz GM (2024)
MISATO: machine learning dataset of protein-ligand complexes for structure-based drug discovery.
Nature computational science, Issue 5, Vol. 4, 367-378
DOI: 10.1038/s43588-024-00627-2, PubMed: 38730184

Suladze S, Sustay Martinez C, Rodriguez Camargo DC, Engler J, Rodina N, Sarkar R, Zacharias M, Reif B (2024)
Structural Insights into Seeding Mechanisms of hIAPP Fibril Formation.
Journal of the American Chemical Society, Issue 20, Vol. 146, 13783-13796
DOI: 10.1021/jacs.3c14233, PubMed: 38723619

Legen J, Lenzen B, Kachariya N, Feltgen S, Gao Y, Mergenthal S, Weber W, Klotzsch E, Zoschke R, Sattler M, Schmitz-Linneweber C (2024)
A prion-like domain is required for phase separation and chloroplast RNA processing during cold acclimation in Arabidopsis.
The Plant cell, Issue 8, Vol. 36, 2851-2872
DOI: 10.1093/plcell/koae145, PubMed: 38723165

Martínez-Lumbreras S, Träger LK, Mulorz MM, Payr M, Dikaya V, Hipp C, König J, Sattler M (2024)
Intramolecular autoinhibition regulates the selectivity of PRPF40A tandem WW domains for proline-rich motifs.
Nature communications, Issue 1, Vol. 15, 3888
DOI: 10.1038/s41467-024-48004-x, PubMed: 38719828

Proske M, Janowski R, Bacher S, Kang HS, Monecke T, Koehler T, Hutten S, Tretter J, Crois A, Molitor L, Varela-Rial A, Fino R, Donati E, De Fabritiis G, Dormann D, Sattler M, Niessing D (2024)
PURA syndrome-causing mutations impair PUR-domain integrity and affect P-body association.
eLife, Vol. 13
DOI: 10.7554/eLife.93561, PubMed: 38655849

Gaussmann S, Peschel R, Ott J, Zak KM, Sastre J, Delhommel F, Popowicz GM, Boekhoven J, Schliebs W, Erdmann R, Sattler M (2024)
Modulation of peroxisomal import by the PEX13 SH3 domain and a proximal FxxxF binding motif.
Nature communications, Issue 1, Vol. 15, 3317
DOI: 10.1038/s41467-024-47605-w, PubMed: 38632234

Chen YL, Jones AN, Crawford A, Sattler M, Ettinger A, Torres-Padilla ME (2024)
Determinants of minor satellite RNA function in chromosome segregation in mouse embryonic stem cells.
The Journal of cell biology, Issue 7, Vol. 223
DOI: 10.1083/jcb.202309027, PubMed: 38625077

Lis K, Plewka J, Menezes F, Bielecka E, Chykunova Y, Pustelny K, Niebling S, Garcia AS, Garcia-Alai M, Popowicz GM, Czarna A, Kantyka T, Pyrc K (2024)
SARS-CoV-2 Mpro oligomerization as a potential target for therapy.
International journal of biological macromolecules, Issue Pt 1, Vol. 267, 131392
DOI: 10.1016/j.ijbiomac.2024.131392, PubMed: 38582483

Hartog PBR, Krüger F, Genheden S, Tetko IV (2024)
Using test-time augmentation to investigate explainable AI: inconsistencies between method, model and human intuition.
Journal of cheminformatics, Issue 1, Vol. 16, 39
DOI: 10.1186/s13321-024-00824-1, PubMed: 38576047

Klingelhuber F, Frendo-Cumbo S, Omar-Hmeadi M, Massier L, Kakimoto P, Taylor AJ, Couchet M, Ribicic S, Wabitsch M, Messias AC, Iuso A, Müller TD, Rydén M, Mejhert N, Krahmer N (2024)
A spatiotemporal proteomic map of human adipogenesis.
Nature metabolism, Issue 5, Vol. 6, 861-879
DOI: 10.1038/s42255-024-01025-8, PubMed: 38565923

Matsuda A, Plewka J, Rawski M, Mourão A, Zajko W, Siebenmorgen T, Kresik L, Lis K, Jones AN, Pachota M, Karim A, Hartman K, Nirwal S, Sonani R, Chykunova Y, Minia I, Mak P, Landthaler M, Nowotny M, Dubin G, Sattler M, Suder P, Popowicz GM, Pyrć K, Czarna A (2024)
Despite the odds: formation of the SARS-CoV-2 methylation complex.
Nucleic acids research, Issue 11, Vol. 52, 6441-6458
DOI: 10.1093/nar/gkae165, PubMed: 38499483

Xu M, Ito-Kureha T, Kang HS, Chernev A, Raj T, Hoefig KP, Hohn C, Giesert F, Wang Y, Pan W, Ziętara N, Straub T, Feederle R, Daniel C, Adler B, König J, Feske S, Tsokos GC, Wurst W, Urlaub H, Sattler M, Kisielow J, Wulczyn FG, Łyszkiewicz M, Heissmeyer V (2024)
The thymocyte-specific RNA-binding protein Arpp21 provides TCR repertoire diversity by binding to the 3'-UTR and promoting Rag1 mRNA expression.
Nature communications, Issue 1, Vol. 15, 2194
DOI: 10.1038/s41467-024-46371-z, PubMed: 38467629

Sturla S, Dai J, Kraegeloh A, Normura D, Tetko I, Wang Y, Serrano J (2024)
Invitation to Apply or Nominate for Membership in the Early Career Board of Chemical Research in Toxicology.
Chemical research in toxicology, Issue 2, Vol. 37, 127-128
DOI: 10.1021/acs.chemrestox.3c00415, PubMed: 38369925

Sang CC, Moore G, Tereshchenko M, Nosella ML, Zhang H, Alderson TR, Dasovich M, Leung A, Finkelstein IJ, Forman-Kay JD, Lee HO (2024)
PARP1 condensates differentially partition DNA repair proteins and enhance DNA ligation.
bioRxiv : the preprint server for biology
DOI: 10.1101/2024.01.20.575817, PubMed: 38328070

Hunklinger A, Hartog P, Šícho M, Godin G, Tetko IV (2024)
The openOCHEM consensus model is the best-performing open-source predictive model in the First EUOS/SLAS joint compound solubility challenge.
SLAS discovery : advancing life sciences R & D, Issue 2, Vol. 29, 100144
DOI: 10.1016/j.slasd.2024.01.005, PubMed: 38316342

Roca-Martínez J, Kang HS, Sattler M, Vranken W (2024)
Analysis of the inter-domain orientation of tandem RRM domains with diverse linkers: connecting experimental with AlphaFold2 predicted models.
NAR genomics and bioinformatics, Issue 1, Vol. 6, lqae002
DOI: 10.1093/nargab/lqae002, PubMed: 38288375

Witzenberger M, Janowski R, Niessing D (2024)
Crystal structure of the RNA-recognition motif of Drosophila melanogaster tRNA (uracil-5-)-methyltransferase homolog A.
Acta crystallographica. Section F, Structural biology communications, Issue Pt 2, Vol. 80, 36-42
DOI: 10.1107/S2053230X24000645, PubMed: 38270511

Theobald SJ, Fiestas E, Schneider A, Ostermann B, Danisch S, von Kaisenberg C, Rybniker J, Hammerschmidt W, Zeidler R, Stripecke R (2023)
Fully Human Herpesvirus-Specific Neutralizing IgG Antibodies Generated by EBV Immortalization of Splenocytes-Derived from Immunized Humanized Mice.
Cells, Issue 1, Vol. 13
DOI: 10.3390/cells13010020, PubMed: 38201224

Giehler F, Ostertag MS, Sommermann T, Weidl D, Sterz KR, Kutz H, Moosmann A, Feller SM, Geerlof A, Biesinger B, Popowicz GM, Kirchmair J, Kieser A (2024)
Epstein-Barr virus-driven B cell lymphoma mediated by a direct LMP1-TRAF6 complex.
Nature communications, Issue 1, Vol. 15, 414
DOI: 10.1038/s41467-023-44455-w, PubMed: 38195569

Lewinski M, Steffen A, Kachariya N, Elgner M, Schmal C, Messini N, Köster T, Reichel M, Sattler M, Zarnack K, Staiger D (2024)
Arabidopsis thaliana GLYCINE RICH RNA-BINDING PROTEIN 7 interaction with its iCLIP target LHCB1.1 correlates with changes in RNA stability and circadian oscillation.
The Plant journal : for cell and molecular biology, Issue 1, Vol. 118, 203-224
DOI: 10.1111/tpj.16601, PubMed: 38124335

Voinarovska V, Kabeshov M, Dudenko D, Genheden S, Tetko IV (2024)
When Yield Prediction Does Not Yield Prediction: An Overview of the Current Challenges.
Journal of chemical information and modeling, Issue 1, Vol. 64, 42-56
DOI: 10.1021/acs.jcim.3c01524, PubMed: 38116926

Aretz J, Aziz M, Strohmeyer N, Sattler M, Fässler R (2023)
Talin and kindlin use integrin tail allostery and direct binding to activate integrins.
Nature structural & molecular biology, Issue 12, Vol. 30, 1913-1924
DOI: 10.1038/s41594-023-01139-9, PubMed: 38087085

Sever AIM, Alderson TR, Rennella E, Aramini JM, Liu ZH, Harkness RW, Kay LE (2023)
Activation of caspase-9 on the apoptosome as studied by methyl-TROSY NMR.
Proceedings of the National Academy of Sciences of the United States of America, Issue 51, Vol. 120, e2310944120
DOI: 10.1073/pnas.2310944120, PubMed: 38085782

Fukumura K, Sperotto L, Seuß S, Kang HS, Yoshimoto R, Sattler M, Mayeda A (2023)
SAP30BP interacts with RBM17/SPF45 to promote splicing in a subset of human short introns.
Cell reports, Issue 12, Vol. 42, 113534
DOI: 10.1016/j.celrep.2023.113534, PubMed: 38065098

Higuera-Rodriguez RA, De Pascali MC, Aziz M, Sattler M, Rant U, Kaiser W (2023)
Kinetic FRET Assay to Measure Binding-Induced Conformational Changes of Nucleic Acids.
ACS sensors, Issue 12, Vol. 8, 4597-4606
DOI: 10.1021/acssensors.3c01527, PubMed: 38060303

Kitel R, Surmiak E, Borggräfe J, Kalinowska-Tluscik J, Golik P, Czub M, Uzar W, Musielak B, Madej M, Popowicz GM, Dubin G, Holak TA (2023)
Discovery of Inhibitory Fragments That Selectively Target Spire2-FMN2 Interaction.
Journal of medicinal chemistry, Issue 23, Vol. 66, 15715-15727
DOI: 10.1021/acs.jmedchem.3c00877, PubMed: 38039505

Roessler J, Pich D, Krähling V, Becker S, Keppler OT, Zeidler R, Hammerschmidt W (2023)
SARS-CoV-2 and Epstein-Barr Virus-like Particles Associate and Fuse with Extracellular Vesicles in Virus Neutralization Tests.
Biomedicines, Issue 11, Vol. 11
DOI: 10.3390/biomedicines11112892, PubMed: 38001893

Nakamura T, Mishima E, Yamada N, Mourão ASD, Trümbach D, Doll S, Wanninger J, Lytton E, Sennhenn P, Nishida Xavier da Silva T, Angeli JPF, Sattler M, Proneth B, Conrad M (2023)
Integrated chemical and genetic screens unveil FSP1 mechanisms of ferroptosis regulation.
Nature structural & molecular biology, Issue 11, Vol. 30, 1806-1815
DOI: 10.1038/s41594-023-01136-y, PubMed: 37957306

Šmelko A, Blahut J, Reif B, Tošner Z (2023)
Performance of the cross-polarization experiment in conditions of radiofrequency field inhomogeneity and slow to ultrafast magic angle spinning (MAS).
Magnetic resonance (Gottingen, Germany), Issue 2, Vol. 4, 199-215
DOI: 10.5194/mr-4-199-2023, PubMed: 37904859

Alderson TR, Pritišanac I, Kolarić Đ, Moses AM, Forman-Kay JD (2023)
Systematic identification of conditionally folded intrinsically disordered regions by AlphaFold2.
Proceedings of the National Academy of Sciences of the United States of America, Issue 44, Vol. 120, e2304302120
DOI: 10.1073/pnas.2304302120, PubMed: 37878721

Pustelny K, Grygier P, Barzowska A, Pucelik B, Matsuda A, Mrowiec K, Slugocka E, Popowicz GM, Dubin G, Czarna A (2023)
Binding mechanism and biological effects of flavone DYRK1A inhibitors for the design of new antidiabetics.
Scientific reports, Issue 1, Vol. 13, 18114
DOI: 10.1038/s41598-023-44810-3, PubMed: 37872245

Aschenbrenner I, Siebenmorgen T, Lopez A, Parr M, Ruckgaber P, Kerle A, Rührnößl F, Catici D, Haslbeck M, Frishman D, Sattler M, Zacharias M, Feige MJ (2023)
Assembly-dependent Structure Formation Shapes Human Interleukin-23 versus Interleukin-12 Secretion.
Journal of molecular biology, Issue 23, Vol. 435, 168300
DOI: 10.1016/j.jmb.2023.168300, PubMed: 37805067

Vincenzi M, Kremić A, Jouve A, Lattanzi R, Miele R, Benharouga M, Alfaidy N, Migrenne-Li S, Kanthasamy AG, Porcionatto M, Ferrara N, Tetko IV, Désaubry L, Nebigil CG (2023)
Therapeutic Potential of Targeting Prokineticin Receptors in Diseases.
Pharmacological reviews, Issue 6, Vol. 75, 1167-1199
DOI: 10.1124/pharmrev.122.000801, PubMed: 37684054

Roll W, Müther M, Böning G, Delker A, Warneke N, Gildehaus FJ, Schäfers M, Stummer W, Zeidler R, Reulen HJ, Stegger L (2023)
First clinical experience with fractionated intracavitary radioimmunotherapy using [177Lu]Lu-6A10-Fab fragments in patients with glioblastoma: a pilot study.
EJNMMI research, Issue 1, Vol. 13, 78
DOI: 10.1186/s13550-023-01029-7, PubMed: 37665396

Menezes F, Popowicz GM (2023)
When catchers meet - a computational study on the dimerization of the Buckycatcher.
Physical chemistry chemical physics : PCCP, Issue 35, Vol. 25, 24031-24041
DOI: 10.1039/d3cp02903d, PubMed: 37646477

Shi E, Wu Z, Karaoglan BS, Schwenk-Zieger S, Kranz G, Abdul Razak N, Reichel CA, Canis M, Baumeister P, Zeidler R, Gires O (2023)
5'-Ectonucleotidase CD73/NT5E supports EGFR-mediated invasion of HPV-negative head and neck carcinoma cells.
Journal of biomedical science, Issue 1, Vol. 30, 72
DOI: 10.1186/s12929-023-00968-6, PubMed: 37620936

Klambauer G, Clevert DA, Shah I, Benfenati E, Tetko IV (2023)
Introduction to the Special Issue: AI Meets Toxicology.
Chemical research in toxicology, Issue 8, Vol. 36, 1163-1167
DOI: 10.1021/acs.chemrestox.3c00217, PubMed: 37599584

Enders L, Siklos M, Borggräfe J, Gaussmann S, Koren A, Malik M, Tomek T, Schuster M, Reiniš J, Hahn E, Rukavina A, Reicher A, Casteels T, Bock C, Winter GE, Hannich JT, Sattler M, Kubicek S (2023)
Pharmacological perturbation of the phase-separating protein SMNDC1.
Nature communications, Issue 1, Vol. 14, 4504
DOI: 10.1038/s41467-023-40124-0, PubMed: 37587144

Ebersberger S, Hipp C, Mulorz MM, Buchbender A, Hubrich D, Kang HS, Martínez-Lumbreras S, Kristofori P, Sutandy FXR, Llacsahuanga Allcca L, Schönfeld J, Bakisoglu C, Busch A, Hänel H, Tretow K, Welzel M, Di Liddo A, Möckel MM, Zarnack K, Ebersberger I, Legewie S, Luck K, Sattler M, König J (2023)
FUBP1 is a general splicing factor facilitating 3' splice site recognition and splicing of long introns.
Molecular cell, Issue 15, Vol. 83, 2653-2672.e15
DOI: 10.1016/j.molcel.2023.07.002, PubMed: 37506698

Troisi R, Napolitano V, Rossitto E, Osman W, Nagano M, Wakui K, Popowicz GM, Yoshimoto K, Sica F (2023)
Steric hindrance and structural flexibility shape the functional properties of a guanine-rich oligonucleotide.
Nucleic acids research, Issue 16, Vol. 51, 8880-8890
DOI: 10.1093/nar/gkad634, PubMed: 37503836

Soni K, Jagtap PKA, Martínez-Lumbreras S, Bonnal S, Geerlof A, Stehle R, Simon B, Valcárcel J, Sattler M (2023)
Structural basis for specific RNA recognition by the alternative splicing factor RBM5.
Nature communications, Issue 1, Vol. 14, 4233
DOI: 10.1038/s41467-023-39961-w, PubMed: 37454201

Vistoli G, Manelfi C, Talarico C, Fava A, Warshel A, Tetko IV, Apostolov R, Ye Y, Latini C, Ficarelli F, Palermo G, Gadioli D, Vitali E, Varriale G, Pisapia V, Scaturro M, Coletti S, Gregori D, Gruffat D, Leija E, Hessenauer S, Delbianco A, Allegretti M, Beccari AR (2023)
MEDIATE - Molecular DockIng at homE: Turning collaborative simulations into therapeutic solutions.
Expert opinion on drug discovery, Issue 8, Vol. 18, 821-833
DOI: 10.1080/17460441.2023.2221025, PubMed: 37424369

Marciniak M, Mróz P, Napolitano V, Kalel VC, Fino R, Pykacz E, Schliebs W, Plettenburg O, Erdmann R, Sattler M, Popowicz GM, Dawidowski M (2023)
Development of novel PEX5-PEX14 protein-protein interaction (PPI) inhibitors based on an oxopiperazine template.
European journal of medicinal chemistry, Vol. 258, 115587
DOI: 10.1016/j.ejmech.2023.115587, PubMed: 37406382

Witzenberger M, Burczyk S, Settele D, Mayer W, Welp LM, Heiss M, Wagner M, Monecke T, Janowski R, Carell T, Urlaub H, Hauck SM, Voigt A, Niessing D (2023)
Human TRMT2A methylates tRNA and contributes to translation fidelity.
Nucleic acids research, Issue 16, Vol. 51, 8691-8710
DOI: 10.1093/nar/gkad565, PubMed: 37395448

Nakamura T, Hipp C, Santos Dias Mourão A, Borggräfe J, Aldrovandi M, Henkelmann B, Wanninger J, Mishima E, Lytton E, Emler D, Proneth B, Sattler M, Conrad M (2023)
Phase separation of FSP1 promotes ferroptosis.
Nature, Issue 7969, Vol. 619, 371-377
DOI: 10.1038/s41586-023-06255-6, PubMed: 37380771

Pradhan T, Sarkar R, Meighen-Berger KM, Feige MJ, Zacharias M, Reif B (2023)
Mechanistic insights into the aggregation pathway of the patient-derived immunoglobulin light chain variable domain protein FOR005.
Nature communications, Issue 1, Vol. 14, 3755
DOI: 10.1038/s41467-023-39280-0, PubMed: 37353525

Calonaci N, Bernetti M, Jones A, Sattler M, Bussi G (2023)
Molecular Dynamics Simulations with Grand-Canonical Reweighting Suggest Cooperativity Effects in RNA Structure Probing Experiments.
Journal of chemical theory and computation, Issue 12, Vol. 19, 3672-3685
DOI: 10.1021/acs.jctc.3c00084, PubMed: 37288967

Günsel U, Klöpfer K, Häusler E, Hitzenberger M, Bölter B, Sperl LE, Zacharias M, Soll J, Hagn F (2023)
Structural basis of metabolite transport by the chloroplast outer envelope channel OEP21.
Nature structural & molecular biology, Issue 6, Vol. 30, 761-769
DOI: 10.1038/s41594-023-00984-y, PubMed: 37156968

Mohamadi M, Goricanec D, Wagner G, Hagn F (2023)
NMR sample optimization and backbone assignment of a stabilized neurotensin receptor.
Journal of structural biology, Issue 2, Vol. 215, 107970
DOI: 10.1016/j.jsb.2023.107970, PubMed: 37142193

Svilenov HL, Delhommel F, Siebenmorgen T, Rührnößl F, Popowicz GM, Reiter A, Sattler M, Brockmeyer C, Buchner J (2023)
Extrinsic stabilization of antiviral ACE2-Fc fusion proteins targeting SARS-CoV-2.
Communications biology, Issue 1, Vol. 6, 386
DOI: 10.1038/s42003-023-04762-w, PubMed: 37031320

Menezes F, Popowicz GM (2023)
A Buckycatcher in Solution-A Computational Perspective.
Molecules (Basel, Switzerland), Issue 6, Vol. 28
DOI: 10.3390/molecules28062841, PubMed: 36985812

Agam G, Gebhardt C, Popara M, Mächtel R, Folz J, Ambrose B, Chamachi N, Chung SY, Craggs TD, de Boer M, Grohmann D, Ha T, Hartmann A, Hendrix J, Hirschfeld V, Hübner CG, Hugel T, Kammerer D, Kang HS, Kapanidis AN, Krainer G, Kramm K, Lemke EA, Lerner E, Margeat E, Martens K, Michaelis J, Mitra J, Moya Muñoz GG, Quast RB, Robb NC, Sattler M, Schlierf M, Schneider J, Schröder T, Sefer A, Tan PS, Thurn J, Tinnefeld P, van Noort J, Weiss S, Wendler N, Zijlstra N, Barth A, Seidel CAM, Lamb DC, Cordes T (2023)
Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins.
Nature methods, Issue 4, Vol. 20, 523-535
DOI: 10.1038/s41592-023-01807-0, PubMed: 36973549

Escher BI, Altenburger R, Blüher M, Colbourne JK, Ebinghaus R, Fantke P, Hein M, Köck W, Kümmerer K, Leipold S, Li X, Scheringer M, Scholz S, Schloter M, Schweizer PJ, Tal T, Tetko I, Traidl-Hoffmann C, Wick LY, Fenner K (2023)
Modernizing persistence-bioaccumulation-toxicity (PBT) assessment with high throughput animal-free methods.
Archives of toxicology, Issue 5, Vol. 97, 1267-1283
DOI: 10.1007/s00204-023-03485-5, PubMed: 36952002

Grygier P, Pustelny K, Nowak J, Golik P, Popowicz GM, Plettenburg O, Dubin G, Menezes F, Czarna A (2023)
Silmitasertib (CX-4945), a Clinically Used CK2-Kinase Inhibitor with Additional Effects on GSK3β and DYRK1A Kinases: A Structural Perspective.
Journal of medicinal chemistry, Issue 6, Vol. 66, 4009-4024
DOI: 10.1021/acs.jmedchem.2c01887, PubMed: 36883902

Weller M, Sattler M, Rant U (2023)
Development of an aptamer-based screening for identification and characterization of novel RNA therapeutics using switchSENSE® technology.
Biophysical journal, Issue 3S1, Vol. 122, 357a
DOI: 10.1016/j.bpj.2022.11.1974, PubMed: 36783808

Roca-Martínez J, Dhondge H, Sattler M, Vranken WF (2023)
Deciphering the RRM-RNA recognition code: A computational analysis.
PLoS computational biology, Issue 1, Vol. 19, e1010859
DOI: 10.1371/journal.pcbi.1010859, PubMed: 36689472

Gui X, Feng S, Li Z, Li Y, Reif B, Shi B, Niu Z (2023)
Liquid-liquid phase separation of amyloid-β oligomers modulates amyloid fibrils formation.
The Journal of biological chemistry, Issue 3, Vol. 299, 102926
DOI: 10.1016/j.jbc.2023.102926, PubMed: 36682493

Zanuttigh E, Derderian K, Güra MA, Geerlof A, Di Meo I, Cavestro C, Hempfling S, Ortiz-Collazos S, Mauthe M, Kmieć T, Cammarota E, Panzeri MC, Klopstock T, Sattler M, Winkelmann J, Messias AC, Iuso A (2023)
Identification of Autophagy as a Functional Target Suitable for the Pharmacological Treatment of Mitochondrial Membrane Protein-Associated Neurodegeneration (MPAN) In Vitro.
Pharmaceutics, Issue 1, Vol. 15
DOI: 10.3390/pharmaceutics15010267, PubMed: 36678896

Molitor L, Klostermann M, Bacher S, Merl-Pham J, Spranger N, Burczyk S, Ketteler C, Rusha E, Tews D, Pertek A, Proske M, Busch A, Reschke S, Feederle R, Hauck SM, Blum H, Drukker M, Fischer-Posovszky P, König J, Zarnack K, Niessing D (2023)
Depletion of the RNA-binding protein PURA triggers changes in posttranscriptional gene regulation and loss of P-bodies.
Nucleic acids research, Issue 3, Vol. 51, 1297-1316
DOI: 10.1093/nar/gkac1237, PubMed: 36651277

Delhommel F, Martínez-Lumbreras S, Sattler M (2023)
Combining NMR, SAXS and SANS to characterize the structure and dynamics of protein complexes.
Methods in enzymology, Vol. 678, 263-297
DOI: 10.1016/bs.mie.2022.09.020, PubMed: 36641211

Keil P, Wulf A, Kachariya N, Reuscher S, Hühn K, Silbern I, Altmüller J, Keller M, Stehle R, Zarnack K, Sattler M, Urlaub H, Sträßer K (2023)
Npl3 functions in mRNP assembly by recruitment of mRNP components to the transcription site and their transfer onto the mRNA.
Nucleic acids research, Issue 2, Vol. 51, 831-851
DOI: 10.1093/nar/gkac1206, PubMed: 36583366

Chora AF, Pedroso D, Kyriakou E, Pejanovic N, Colaço H, Gozzelino R, Barros A, Willmann K, Velho T, Moita CF, Santos I, Pereira P, Carvalho S, Martins FB, Ferreira JA, de Almeida SF, Benes V, Anrather J, Weis S, Soares MP, Geerlof A, Neefjes J, Sattler M, Messias AC, Neves-Costa A, Moita LF (2022)
DNA damage independent inhibition of NF-κB transcription by anthracyclines.
eLife, Vol. 11
DOI: 10.7554/eLife.77443, PubMed: 36476511

Gopalswamy M, Zheng C, Gaussmann S, Kooshapur H, Hambruch E, Schliebs W, Erdmann R, Antes I, Sattler M (2023)
Distinct conformational and energetic features define the specific recognition of (di)aromatic peptide motifs by PEX14.
Biological chemistry, Issue 2-3, Vol. 404, 179-194
DOI: 10.1515/hsz-2022-0177, PubMed: 36437542

Roessler J, Pich D, Albanese M, Wratil PR, Krähling V, Hellmuth JC, Scherer C, von Bergwelt-Baildon M, Becker S, Keppler OT, Brisson A, Zeidler R, Hammerschmidt W (2022)
Quantitation of SARS-CoV-2 neutralizing antibodies with a virus-free, authentic test.
PNAS nexus, Issue 2, Vol. 1
DOI: 10.1093/pnasnexus/pgac045, PubMed: 36382127

Daniilidis M, Brandl MJ, Hagn F (2022)
The Advanced Properties of Circularized MSP Nanodiscs Facilitate High-resolution NMR Studies of Membrane Proteins.
Journal of molecular biology, Issue 24, Vol. 434, 167861
DOI: 10.1016/j.jmb.2022.167861, PubMed: 36273602

Narayanan D, Tran KT, Pallesen JS, Solbak SMØ, Qin Y, Mukminova E, Luchini M, Vasilyeva KO, González Chichón D, Goutsiou G, Poulsen C, Haapanen N, Popowicz GM, Sattler M, Olagnier D, Gajhede M, Bach A (2022)
Development of Noncovalent Small-Molecule Keap1-Nrf2 Inhibitors by Fragment-Based Drug Discovery.
Journal of medicinal chemistry, Issue 21, Vol. 65, 14481-14526
DOI: 10.1021/acs.jmedchem.2c00830, PubMed: 36263945

Napolitano V, Mróz P, Marciniak M, Kalel VC, Softley CA, Janna Olmos JD, Tippler BG, Schorpp K, Rioton S, Fröhlich T, Plettenburg O, Hadian K, Erdmann R, Sattler M, Popowicz GM, Dawidowski M, Dubin G (2022)
Structure-based design, synthesis and evaluation of a novel family of PEX5-PEX14 interaction inhibitors against Trypanosoma.
European journal of medicinal chemistry, Vol. 243, 114778
DOI: 10.1016/j.ejmech.2022.114778, PubMed: 36194937

Xue K, Sarkar R, Tošner Z, Reif B (2022)
Field and magic angle spinning frequency dependence of proton resonances in rotating solids.
Progress in nuclear magnetic resonance spectroscopy, Vol. 130-131, 47-61
DOI: 10.1016/j.pnmrs.2022.04.001, PubMed: 36113917

Blahut J, Brandl MJ, Pradhan T, Reif B, Tošner Z (2022)
Sensitivity-Enhanced Multidimensional Solid-State NMR Spectroscopy by Optimal-Control-Based Transverse Mixing Sequences.
Journal of the American Chemical Society, Issue 38, Vol. 144, 17336-17340
DOI: 10.1021/jacs.2c06568, PubMed: 36074981

Kitel R, Rodríguez I, Del Corte X, Atmaj J, Żarnik M, Surmiak E, Muszak D, Magiera-Mularz K, Popowicz GM, Holak TA, Musielak B (2022)
Exploring the Surface of the Ectodomain of the PD-L1 Immune Checkpoint with Small-Molecule Fragments.
ACS chemical biology, Issue 9, Vol. 17, 2655-2663
DOI: 10.1021/acschembio.2c00583, PubMed: 36073782

Napolitano V, Softley CA, Blat A, Kalel VC, Schorpp K, Siebenmorgen T, Hadian K, Erdmann R, Sattler M, Popowicz GM, Dubin G (2022)
Small molecule mediated inhibition of protein cargo recognition by peroxisomal transport receptor PEX5 is toxic to Trypanosoma.
Scientific reports, Issue 1, Vol. 12, 14705
DOI: 10.1038/s41598-022-18841-1, PubMed: 36038611

Kreft L, Schepers A, Hils M, Swiontek K, Flatley A, Janowski R, Mirzaei MK, Dittmar M, Chakrapani N, Desai MS, Eyerich S, Deng L, Niessing D, Fischer K, Feederle R, Blank S, Schmidt-Weber CB, Hilger C, Biedermann T, Ohnmacht C (2022)
A novel monoclonal IgG1 antibody specific for Galactose-alpha-1,3-galactose questions alpha-Gal epitope expression by bacteria.
Frontiers in immunology, Vol. 13, 958952
DOI: 10.3389/fimmu.2022.958952, PubMed: 35990627

Tetko IV, Klambauer G, Clevert DA, Shah I, Benfenati E (2022)
Artificial Intelligence Meets Toxicology.
Chemical research in toxicology, Issue 8, Vol. 35, 1289-1290
DOI: 10.1021/acs.chemrestox.2c00196, PubMed: 35965447

Menezes F, Popowicz GM (2022)
ULYSSES: An Efficient and Easy to Use Semiempirical Library for C+.
Journal of chemical information and modeling, Issue 16, Vol. 62, 3685-3694
DOI: 10.1021/acs.jcim.2c00757, PubMed: 35930308

Sundaria A, Liberta F, Savran D, Sarkar R, Rodina N, Peters C, Schwierz N, Haupt C, Schmidt M, Reif B (2022)
SAA fibrils involved in AA amyloidosis are similar in bulk and by single particle reconstitution: A MAS solid-state NMR study.
Journal of structural biology: X, Vol. 6, 100069
DOI: 10.1016/j.yjsbx.2022.100069, PubMed: 35924280

Jones AN, Graß C, Meininger I, Geerlof A, Klostermann M, Zarnack K, Krappmann D, Sattler M (2022)
Modulation of pre-mRNA structure by hnRNP proteins regulates alternative splicing of MALT1.
Science advances, Issue 31, Vol. 8, eabp9153
DOI: 10.1126/sciadv.abp9153, PubMed: 35921415

Hiepp L, Mayr D, Gärtner K, Schmoeckel E, Klauschen F, Burges A, Mahner S, Zeidler R, Czogalla B (2022)
Carbonic anhydrase XII as biomarker and therapeutic target in ovarian carcinomas.
PloS one, Issue 7, Vol. 17, e0271630
DOI: 10.1371/journal.pone.0271630, PubMed: 35901081

Menezes F, Popowicz GM (2022)
Acid Rain and Flue Gas: Quantum Chemical Hydrolysis of NO2.
Chemphyschem : a European journal of chemical physics and physical chemistry, Issue 21, Vol. 23, e202200395
DOI: 10.1002/cphc.202200395, PubMed: 35875889

Nguyen A, Gemmecker G, Softley CA, Movsisyan LD, Pfaffeneder T, Heine A, Reuter K, Diederich F, Sattler M, Klebe G (2022)
19F-NMR Unveils the Ligand-Induced Conformation of a Catalytically Inactive Twisted Homodimer of tRNA-Guanine Transglycosylase.
ACS chemical biology, Issue 7, Vol. 17, 1745-1755
DOI: 10.1021/acschembio.2c00080, PubMed: 35763700

Jones AN, Walbrun A, Falleroni F, Rief M, Sattler M (2022)
Conformational Effects of a Cancer-Linked Mutation in Pri-miR-30c RNA.
Journal of molecular biology, Issue 18, Vol. 434, 167705
DOI: 10.1016/j.jmb.2022.167705, PubMed: 35760371

Mohid SA, Biswas K, Won T, Mallela LS, Gucchait A, Butzke L, Sarkar R, Barkham T, Reif B, Leipold E, Roy S, Misra AK, Lakshminarayanan R, Lee D, Bhunia A (2022)
Structural insights into the interaction of antifungal peptides and ergosterol containing fungal membrane.
Biochimica et biophysica acta. Biomembranes, Issue 10, Vol. 1864, 183996
DOI: 10.1016/j.bbamem.2022.183996, PubMed: 35753394

Menezes F, Popowicz GM (2022)
How to Catch the Ball: Fullerene Binding to the Corannulene Pincer.
Molecules (Basel, Switzerland), Issue 12, Vol. 27
DOI: 10.3390/molecules27123838, PubMed: 35744963

Opdensteinen P, Sperl LE, Mohamadi M, Kündgen-Redding N, Hagn F, Buyel JF (2022)
The transient expression of recombinant proteins in plant cell packs facilitates stable isotope labelling for NMR spectroscopy.
Plant biotechnology journal, Issue 10, Vol. 20, 1928-1939
DOI: 10.1111/pbi.13873, PubMed: 35702941

Jones AN, Mourão A, Czarna A, Matsuda A, Fino R, Pyrc K, Sattler M, Popowicz GM (2022)
Characterization of SARS-CoV-2 replication complex elongation and proofreading activity.
Scientific reports, Issue 1, Vol. 12, 9593
DOI: 10.1038/s41598-022-13380-1, PubMed: 35688849

Jussupow A, Lopez A, Baumgart M, Mader SL, Sattler M, Kaila VRI (2022)
Extended conformational states dominate the Hsp90 chaperone dynamics.
The Journal of biological chemistry, Issue 7, Vol. 298, 102101
DOI: 10.1016/j.jbc.2022.102101, PubMed: 35667441

Czarna A, Plewka J, Kresik L, Matsuda A, Karim A, Robinson C, O'Byrne S, Cunningham F, Georgiou I, Wilk P, Pachota M, Popowicz G, Wyatt PG, Dubin G, Pyrć K (2022)
Refolding of lid subdomain of SARS-CoV-2 nsp14 upon nsp10 interaction releases exonuclease activity.
Structure (London, England : 1993), Issue 8, Vol. 30, 1050-1054.e2
DOI: 10.1016/j.str.2022.04.014, PubMed: 35609600

Spreitzer E, Alderson TR, Bourgeois B, Eggenreich L, Habacher H, Brahmersdorfer G, Pritišanac I, Sánchez-Murcia PA, Madl T (2022)
FOXO transcription factors differ in their dynamics and intra/intermolecular interactions.
Current research in structural biology, Vol. 4, 118-133
DOI: 10.1016/j.crstbi.2022.04.001, PubMed: 35573459

Karlov DS, Sosnin S, Tetko IV, Fedorov MV (2019)
Chemical space exploration guided by deep neural networks.
RSC advances, Issue 9, Vol. 9, 5151-5157
DOI: 10.1039/c8ra10182e, PubMed: 35514634

Popowicz GM, Pyrc K, Hadian K (2022)
Vaccination versus SARS-CoV-2 Omicron: three vaccine doses win the battle.
Signal transduction and targeted therapy, Issue 1, Vol. 7, 140
DOI: 10.1038/s41392-022-01000-3, PubMed: 35477929

Kellner M, von Neubeck B, Czogalla B, Feederle R, Vick B, Jeremias I, Zeidler R (2022)
A Novel Anti-CD73 Antibody That Selectively Inhibits Membrane CD73 Shows Antitumor Activity and Induces Tumor Immune Escape.
Biomedicines, Issue 4, Vol. 10
DOI: 10.3390/biomedicines10040825, PubMed: 35453575

Metelytsia LO, Hodyna DM, Semenyuta IV, Kovalishyn VV, Rogalsky SP, Derevianko KY, Brovarets VS, Tetko IV (2022)
Theoretical and Experimental Studies of Phosphonium Ionic Liquids as Potential Antibacterials of MDR Acinetobacter baumannii.
Antibiotics (Basel, Switzerland), Issue 4, Vol. 11
DOI: 10.3390/antibiotics11040491, PubMed: 35453241

Jessberger N, Diedrich R, Janowski R, Niessing D, Märtlbauer E (2022)
Presence and function of Hbl B', the fourth protein component encoded by the hbl operon in Bacillus cereus.
Virulence, Issue 1, Vol. 13, 483-501
DOI: 10.1080/21505594.2022.2046951, PubMed: 35291913

Kogan PS, Wirth F, Tomar A, Darr J, Teperino R, Lahm H, Dreßen M, Puluca N, Zhang Z, Neb I, Beck N, Luzius T, de la Osa de la Rosa L, Gärtner K, Hüls C, Zeidler R, Ramanujam D, Engelhardt S, Wenk C, Holdt LM, Mononen M, Sahara M, Cleuziou J, Hörer J, Lange R, Krane M, Doppler SA (2022)
Uncovering the molecular identity of cardiosphere-derived cells (CDCs) by single-cell RNA sequencing.
Basic research in cardiology, Issue 1, Vol. 117, 11
DOI: 10.1007/s00395-022-00913-y, PubMed: 35258704

Schuhmann P, Engstler C, Klöpfer K, Gügel IL, Abbadi A, Dreyer F, Leckband G, Bölter B, Hagn F, Soll J, Carrie C (2022)
Two wrongs make a right: heat stress reversion of a male-sterile Brassica napus line.
Journal of experimental botany, Issue 11, Vol. 73, 3531-3551
DOI: 10.1093/jxb/erac082, PubMed: 35226731

Zinngrebe J, Moepps B, Monecke T, Gierschik P, Schlichtig F, Barth TFE, Strauß G, Boldrin E, Posovszky C, Schulz A, Beringer O, Rieser E, Jacobsen EM, Lorenz MR, Schwarz K, Pannicke U, Walczak H, Niessing D, Schuetz C, Fischer-Posovszky P, Debatin KM (2022)
Compound heterozygous variants in OTULIN are associated with fulminant atypical late-onset ORAS.
EMBO molecular medicine, Issue 3, Vol. 14, e14901
DOI: 10.15252/emmm.202114901, PubMed: 35170849

Jones AN, Tikhaia E, Mourão A, Sattler M (2022)
Structural effects of m6A modification of the Xist A-repeat AUCG tetraloop and its recognition by YTHDC1.
Nucleic acids research, Issue 4, Vol. 50, 2350-2362
DOI: 10.1093/nar/gkac080, PubMed: 35166835

Rusanov AI, Dmitrieva OA, Mamardashvili NZ, Tetko IV (2022)
More Is Not Always Better: Local Models Provide Accurate Predictions of Spectral Properties of Porphyrins.
International journal of molecular sciences, Issue 3, Vol. 23
DOI: 10.3390/ijms23031201, PubMed: 35163123

Margreiter MA, Witzenberger M, Wasser Y, Davydova E, Janowski R, Metz J, Habib P, Sahnoun SEM, Sobisch C, Poma B, Palomino-Hernandez O, Wagner M, Carell T, Jon Shah N, Schulz JB, Niessing D, Voigt A, Rossetti G (2022)
Small-molecule modulators of TRMT2A decrease PolyQ aggregation and PolyQ-induced cell death.
Computational and structural biotechnology journal, Vol. 20, 443-458
DOI: 10.1016/j.csbj.2021.12.029, PubMed: 35070167

Biebl MM, Delhommel F, Faust O, Zak KM, Agam G, Guo X, Mühlhofer M, Dahiya V, Hillebrand D, Popowicz GM, Kampmann M, Lamb DC, Rosenzweig R, Sattler M, Buchner J (2022)
NudC guides client transfer between the Hsp40/70 and Hsp90 chaperone systems.
Molecular cell, Issue 3, Vol. 82, 555-569.e7
DOI: 10.1016/j.molcel.2021.12.031, PubMed: 35063133

Testa C, Papini AM, Zeidler R, Vullo D, Carta F, Supuran CT, Rovero P (2022)
First studies on tumor associated carbonic anhydrases IX and XII monoclonal antibodies conjugated to small molecule inhibitors.
Journal of enzyme inhibition and medicinal chemistry, Issue 1, Vol. 37, 592-596
DOI: 10.1080/14756366.2021.2004593, PubMed: 35057692

Napolitano V, Dabrowska A, Schorpp K, Mourão A, Barreto-Duran E, Benedyk M, Botwina P, Brandner S, Bostock M, Chykunova Y, Czarna A, Dubin G, Fröhlich T, Hölscher M, Jedrysik M, Matsuda A, Owczarek K, Pachota M, Plettenburg O, Potempa J, Rothenaigner I, Schlauderer F, Slysz K, Szczepanski A, Greve-Isdahl Mohn K, Blomberg B, Sattler M, Hadian K, Popowicz GM, Pyrc K (2022)
Acriflavine, a clinically approved drug, inhibits SARS-CoV-2 and other betacoronaviruses.
Cell chemical biology, Issue 5, Vol. 29, 774-784.e8
DOI: 10.1016/j.chembiol.2021.11.006, PubMed: 35021060

Li M, Gaussmann S, Tippler B, Ott J, Popowicz GM, Schliebs W, Sattler M, Erdmann R, Kalel VC (2021)
Novel Trypanocidal Inhibitors that Block Glycosome Biogenesis by Targeting PEX3-PEX19 Interaction.
Frontiers in cell and developmental biology, Vol. 9, 737159
DOI: 10.3389/fcell.2021.737159, PubMed: 34988071

Lopez A, Dahiya V, Delhommel F, Freiburger L, Stehle R, Asami S, Rutz D, Blair L, Buchner J, Sattler M (2021)
Client binding shifts the populations of dynamic Hsp90 conformations through an allosteric network.
Science advances, Issue 51, Vol. 7, eabl7295
DOI: 10.1126/sciadv.abl7295, PubMed: 34919431

Olguín-Contreras LF, Mendler AN, Popowicz G, Hu B, Noessner E (2021)
Double Strike Approach for Tumor Attack: Engineering T Cells Using a CD40L:CD28 Chimeric Co-Stimulatory Switch Protein for Enhanced Tumor Targeting in Adoptive Cell Therapy.
Frontiers in immunology, Vol. 12, 750478
DOI: 10.3389/fimmu.2021.750478, PubMed: 34912334

Bernaudat F, Gustems M, Günther J, Oliva MF, Buschle A, Göbel C, Pagniez P, Lupo J, Signor L, Müller CW, Morand P, Sattler M, Hammerschmidt W, Petosa C (2022)
Structural basis of DNA methylation-dependent site selectivity of the Epstein-Barr virus lytic switch protein ZEBRA/Zta/BZLF1.
Nucleic acids research, Issue 1, Vol. 50, 490-511
DOI: 10.1093/nar/gkab1183, PubMed: 34893887

Sahoo BR, Souders 2nd CL, Watanabe-Nakayama T, Deng Z, Linton H, Suladze S, Ivanova MI, Reif B, Ando T, Martyniuk CJ, Ramamoorthy A (2022)
Conformational Tuning of Amylin by Charged Styrene-Maleic-Acid Copolymers.
Journal of molecular biology, Issue 2, Vol. 434, 167385
DOI: 10.1016/j.jmb.2021.167385, PubMed: 34883118

Albanese M, Chen YA, Hüls C, Gärtner K, Tagawa T, Mejias-Perez E, Keppler OT, Göbel C, Zeidler R, Shein M, Schütz AK, Hammerschmidt W (2021)
MicroRNAs are minor constituents of extracellular vesicles that are rarely delivered to target cells.
PLoS genetics, Issue 12, Vol. 17, e1009951
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Reif B (2022)
Deuteration for High-Resolution Detection of Protons in Protein Magic Angle Spinning (MAS) Solid-State NMR.
Chemical reviews, Issue 10, Vol. 122, 10019-10035
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Borchard S, Raschke S, Zak KM, Eberhagen C, Einer C, Weber E, Müller SM, Michalke B, Lichtmannegger J, Wieser A, Rieder T, Popowicz GM, Adamski J, Klingenspor M, Coles AH, Viana R, Vendelbo MH, Sandahl TD, Schwerdtle T, Plitz T, Zischka H (2022)
Bis-choline tetrathiomolybdate prevents copper-induced blood-brain barrier damage.
Life science alliance, Issue 3, Vol. 5
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Mishra K, Fuenzalida-Werner JP, Pennacchietti F, Janowski R, Chmyrov A, Huang Y, Zakian C, Klemm U, Testa I, Niessing D, Ntziachristos V, Stiel AC (2022)
Genetically encoded photo-switchable molecular sensors for optoacoustic and super-resolution imaging.
Nature biotechnology, Issue 4, Vol. 40, 598-605
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Behrens G, Edelmann SL, Raj T, Kronbeck N, Monecke T, Davydova E, Wong EH, Kifinger L, Giesert F, Kirmaier ME, Hohn C, de Jonge LS, Pisfil MG, Fu M, Theurich S, Feske S, Kawakami N, Wurst W, Niessing D, Heissmeyer V (2021)
Disrupting Roquin-1 interaction with Regnase-1 induces autoimmunity and enhances antitumor responses.
Nature immunology, Issue 12, Vol. 22, 1563-1576
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Mühlhofer M, Peters C, Kriehuber T, Kreuzeder M, Kazman P, Rodina N, Reif B, Haslbeck M, Weinkauf S, Buchner J (2021)
Phosphorylation activates the yeast small heat shock protein Hsp26 by weakening domain contacts in the oligomer ensemble.
Nature communications, Issue 1, Vol. 12, 6697
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Heumüller AW, Jones AN, Mourão A, Klangwart M, Shi C, Wittig I, Fischer A, Muhly-Reinholz M, Buchmann GK, Dieterich C, Potente M, Braun T, Grote P, Jaé N, Sattler M, Dimmeler S (2022)
Locus-Conserved Circular RNA cZNF292 Controls Endothelial Cell Flow Responses.
Circulation research, Issue 1, Vol. 130, 67-79
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Ksenofontov AA, Lukanov MM, Bocharov PS, Berezin MB, Tetko IV (2022)
Deep neural network model for highly accurate prediction of BODIPYs absorption.
Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy, Issue Pt 2, Vol. 267, 120577
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Chrustowicz J, Sherpa D, Teyra J, Loke MS, Popowicz GM, Basquin J, Sattler M, Prabu JR, Sidhu SS, Schulman BA (2022)
Multifaceted N-Degron Recognition and Ubiquitylation by GID/CTLH E3 Ligases.
Journal of molecular biology, Issue 2, Vol. 434, 167347
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Fottner M, Weyh M, Gaussmann S, Schwarz D, Sattler M, Lang K (2021)
A modular toolbox to generate complex polymeric ubiquitin architectures using orthogonal sortase enzymes.
Nature communications, Issue 1, Vol. 12, 6515
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Ghosh D, Koch U, Hadian K, Sattler M, Tetko IV (2022)
Highly Accurate Filters to Flag Frequent Hitters in AlphaScreen Assays by Suggesting their Mechanism.
Molecular informatics, Issue 3, Vol. 41, e2100151
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Günsel U, Hagn F (2022)
Lipid Nanodiscs for High-Resolution NMR Studies of Membrane Proteins.
Chemical reviews, Issue 10, Vol. 122, 9395-9421
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Mansouri K, Karmaus AL, Fitzpatrick J, Patlewicz G, Pradeep P, Alberga D, Alepee N, Allen TEH, Allen D, Alves VM, Andrade CH, Auernhammer TR, Ballabio D, Bell S, Benfenati E, Bhattacharya S, Bastos JV, Boyd S, Brown JB, Capuzzi SJ, Chushak Y, Ciallella H, Clark AM, Consonni V, Daga PR, Ekins S, Farag S, Fedorov M, Fourches D, Gadaleta D, Gao F, Gearhart JM, Goh G, Goodman JM, Grisoni F, Grulke CM, Hartung T, Hirn M, Karpov P, Korotcov A, Lavado GJ, Lawless M, Li X, Luechtefeld T, Lunghini F, Mangiatordi GF, Marcou G, Marsh D, Martin T, Mauri A, Muratov EN, Myatt GJ, Nguyen DT, Nicolotti O, Note R, Pande P, Parks AK, Peryea T, Polash AH, Rallo R, Roncaglioni A, Rowlands C, Ruiz P, Russo DP, Sayed A, Sayre R, Sheils T, Siegel C, Silva AC, Simeonov A, Sosnin S, Southall N, Strickland J, Tang Y, Teppen B, Tetko IV, Thomas D, Tkachenko V, Todeschini R, Toma C, Tripodi I, Trisciuzzi D, Tropsha A, Varnek A, Vukovic K, Wang Z, Wang L, Waters KM, Wedlake AJ, Wijeyesakere SJ, Wilson D, Xiao Z, Yang H, Zahoranszky-Kohalmi G, Zakharov AV, Zhang FF, Zhang Z, Zhao T, Zhu H, Zorn KM, Casey W, Kleinstreuer NC (2021)
Erratum: CATMoS: Collaborative Acute Toxicity Modeling Suite.
Environmental health perspectives, Issue 10, Vol. 129, 109001
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Tošner Z, Brandl MJ, Blahut J, Glaser SJ, Reif B (2021)
Maximizing efficiency of dipolar recoupling in solid-state NMR using optimal control sequences.
Science advances, Issue 42, Vol. 7, eabj5913
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Zhang X, Schuhmachers P, Mourão A, Giansanti P, Murer A, Thumann S, Kuklik-Roos C, Beer S, Hauck SM, Hammerschmidt W, Küppers R, Kuster B, Raab M, Strebhardt K, Sattler M, Münz C, Kempkes B (2021)
PLK1-dependent phosphorylation restrains EBNA2 activity and lymphomagenesis in EBV-infected mice.
EMBO reports, Issue 12, Vol. 22, e53007
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Fino R, Lenhart D, Kalel VC, Softley CA, Napolitano V, Byrne R, Schliebs W, Dawidowski M, Erdmann R, Sattler M, Schneider G, Plettenburg O, Popowicz GM (2021)
Computer-Aided Design and Synthesis of a New Class of PEX14 Inhibitors: Substituted 2,3,4,5-Tetrahydrobenzo[F][1,4]oxazepines as Potential New Trypanocidal Agents.
Journal of chemical information and modeling, Issue 10, Vol. 61, 5256-5268
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Sperl LE, Rührnößl F, Schiller A, Haslbeck M, Hagn F (2021)
High-resolution analysis of the conformational transition of pro-apoptotic Bak at the lipid membrane.
The EMBO journal, Issue 20, Vol. 40, e107159
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Tan H, Su W, Zhang W, Zhang J, Sattler M, Zou P (2021)
Generation of novel long-acting GLP-1R agonists using DARPins as a scaffold.
International journal of pharmaceutics, Vol. 607, 121043
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Gasser A, Chen YW, Audebrand A, Daglayan A, Charavin M, Escoubet B, Karpov P, Tetko I, Chan MWY, Cardinale D, Désaubry L, Nebigil CG (2019)
Prokineticin Receptor-1 Signaling Inhibits Dose- and Time-Dependent Anthracycline-Induced Cardiovascular Toxicity Via Myocardial and Vascular Protection.
JACC. CardioOncology, Issue 1, Vol. 1, 84-102
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Fukumura K, Yoshimoto R, Sperotto L, Kang HS, Hirose T, Inoue K, Sattler M, Mayeda A (2021)
SPF45/RBM17-dependent, but not U2AF-dependent, splicing in a distinct subset of human short introns.
Nature communications, Issue 1, Vol. 12, 4910
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Reyes Romero A, Lunev S, Popowicz GM, Calderone V, Gentili M, Sattler M, Plewka J, Taube M, Kozak M, Holak TA, Dömling ASS, Groves MR (2021)
A fragment-based approach identifies an allosteric pocket that impacts malate dehydrogenase activity.
Communications biology, Issue 1, Vol. 4, 949
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Reif B, Ashbrook SE, Emsley L, Hong M (2021)
Solid-state NMR spectroscopy.
Nature reviews. Methods primers, Vol. 1
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Schönfelder J, Pfeiffer PB, Pradhan T, Bijzet J, Hazenberg BPC, Schönland SO, Hegenbart U, Reif B, Haupt C, Fändrich M (2021)
Protease resistance of ex vivo amyloid fibrils implies the proteolytic selection of disease-associated fibril morphologies.
Amyloid : the international journal of experimental and clinical investigation : the official journal of the International Society of Amyloidosis, Issue 4, Vol. 28, 243-251
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de Souza Degenhardt MF, Vitale PAM, Abiko LA, Zacharias M, Sattler M, Oliveira CLP, Salinas RK (2021)
Molecular insights on CALX-CBD12 interdomain dynamics from MD simulations, RDCs, and SAXS.
Biophysical journal, Issue 17, Vol. 120, 3664-3675
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Mansouri K, Karmaus A, Fitzpatrick J, Patlewicz G, Pradeep P, Alberga D, Alepee N, Allen TEH, Allen D, Alves VM, Andrade CH, Auernhammer TR, Ballabio D, Bell S, Benfenati E, Bhattacharya S, Bastos JV, Boyd S, Brown JB, Capuzzi SJ, Chushak Y, Ciallella H, Clark AM, Consonni V, Daga PR, Ekins S, Farag S, Fedorov M, Fourches D, Gadaleta D, Gao F, Gearhart JM, Goh G, Goodman JM, Grisoni F, Grulke CM, Hartung T, Hirn M, Karpov P, Korotcov A, Lavado GJ, Lawless M, Li X, Luechtefeld T, Lunghini F, Mangiatordi GF, Marcou G, Marsh D, Martin T, Mauri A, Muratov EN, Myatt GJ, Nguyen DT, Nicolotti O, Note R, Pande P, Parks AK, Peryea T, Polash A, Rallo R, Roncaglioni A, Rowlands C, Ruiz P, Russo D, Sayed A, Sayre R, Sheils T, Siegel C, Silva AC, Simeonov A, Sosnin S, Southall N, Strickland J, Tang Y, Teppen B, Tetko IV, Thomas D, Tkachenko V, Todeschini R, Toma C, Tripodi I, Trisciuzzi D, Tropsha A, Varnek A, Vukovic K, Wang Z, Wang L, Waters KM, Wedlake AJ, Wijeyesakere SJ, Wilson D, Xiao Z, Yang H, Zahoranszky-Kohalmi G, Zakharov AV, Zhang FF, Zhang Z, Zhao T, Zhu H, Zorn KM, Casey W, Kleinstreuer NC (2021)
Erratum: CATMoS: Collaborative Acute Toxicity Modeling Suite.
Environmental health perspectives, Issue 7, Vol. 129, 79001
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Zak KM, Bostock MJ, Waligorska I, Thøgersen IB, Enghild JJ, Popowicz GM, Grudnik P, Potempa J, Ksiazek M (2021)
Latency, thermal stability, and identification of an inhibitory compound of mirolysin, a secretory protease of the human periodontopathogen Tannerella forsythia.
Journal of enzyme inhibition and medicinal chemistry, Issue 1, Vol. 36, 1267-1281
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Lian X, Xia Z, Li X, Karpov P, Jin H, Tetko IV, Xia J, Wu S (2021)
Anti-MRSA drug discovery by ligand-based virtual screening and biological evaluation.
Bioorganic chemistry, Vol. 114, 105042
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Sperl LE, Hagn F (2021)
NMR Structural and Biophysical Analysis of the Disease-Linked Inner Mitochondrial Membrane Protein MPV17.
Journal of molecular biology, Issue 15, Vol. 433, 167098
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Georgiadi A, Lopez-Salazar V, Merahbi RE, Karikari RA, Ma X, Mourão A, Klepac K, Bühler L, Alfaro AJ, Kaczmarek I, Linford A, Bosma M, Shilkova O, Ritvos O, Nakamura N, Hirose S, Lassi M, Teperino R, Machado J, Scheideler M, Dietrich A, Geerlof A, Feuchtinger A, Blutke A, Fischer K, Müller TD, Kessler K, Schöneberg T, Thor D, Hornemann S, Kruse M, Nawroth P, Pivovarova-Ramich O, Pfeiffer AFH, Sattler M, Blüher M, Herzig S (2021)
Orphan GPR116 mediates the insulin sensitizing effects of the hepatokine FNDC4 in adipose tissue.
Nature communications, Issue 1, Vol. 12, 2999
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Stadler D, Kächele M, Jones AN, Hess J, Urban C, Schneider J, Xia Y, Oswald A, Nebioglu F, Bester R, Lasitschka F, Ringelhan M, Ko C, Chou WM, Geerlof A, van de Klundert MA, Wettengel JM, Schirmacher P, Heikenwälder M, Schreiner S, Bartenschlager R, Pichlmair A, Sattler M, Unger K, Protzer U (2021)
Interferon-induced degradation of the persistent hepatitis B virus cccDNA form depends on ISG20.
EMBO reports, Issue 6, Vol. 22, e49568
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Liu N, Gujrati V, Malekzadeh-Najafabadi J, Werner JPF, Klemm U, Tang L, Chen Z, Prakash J, Huang Y, Stiel A, Mettenleiter G, Aichler M, Blutke A, Walch A, Kleigrewe K, Razansky D, Sattler M, Ntziachristos V (2021)
Croconaine-based nanoparticles enable efficient optoacoustic imaging of murine brain tumors.
Photoacoustics, Vol. 22, 100263
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Gaussmann S, Gopalswamy M, Eberhardt M, Reuter M, Zou P, Schliebs W, Erdmann R, Sattler M (2021)
Membrane Interactions of the Peroxisomal Proteins PEX5 and PEX14.
Frontiers in cell and developmental biology, Vol. 9, 651449
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Mansouri K, Karmaus AL, Fitzpatrick J, Patlewicz G, Pradeep P, Alberga D, Alepee N, Allen TEH, Allen D, Alves VM, Andrade CH, Auernhammer TR, Ballabio D, Bell S, Benfenati E, Bhattacharya S, Bastos JV, Boyd S, Brown JB, Capuzzi SJ, Chushak Y, Ciallella H, Clark AM, Consonni V, Daga PR, Ekins S, Farag S, Fedorov M, Fourches D, Gadaleta D, Gao F, Gearhart JM, Goh G, Goodman JM, Grisoni F, Grulke CM, Hartung T, Hirn M, Karpov P, Korotcov A, Lavado GJ, Lawless M, Li X, Luechtefeld T, Lunghini F, Mangiatordi GF, Marcou G, Marsh D, Martin T, Mauri A, Muratov EN, Myatt GJ, Nguyen DT, Nicolotti O, Note R, Pande P, Parks AK, Peryea T, Polash AH, Rallo R, Roncaglioni A, Rowlands C, Ruiz P, Russo DP, Sayed A, Sayre R, Sheils T, Siegel C, Silva AC, Simeonov A, Sosnin S, Southall N, Strickland J, Tang Y, Teppen B, Tetko IV, Thomas D, Tkachenko V, Todeschini R, Toma C, Tripodi I, Trisciuzzi D, Tropsha A, Varnek A, Vukovic K, Wang Z, Wang L, Waters KM, Wedlake AJ, Wijeyesakere SJ, Wilson D, Xiao Z, Yang H, Zahoranszky-Kohalmi G, Zakharov AV, Zhang FF, Zhang Z, Zhao T, Zhu H, Zorn KM, Casey W, Kleinstreuer NC (2021)
CATMoS: Collaborative Acute Toxicity Modeling Suite.
Environmental health perspectives, Issue 4, Vol. 129, 47013
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Pallesen JS, Narayanan D, Tran KT, Solbak SMØ, Marseglia G, Sørensen LME, Høj LJ, Munafò F, Carmona RMC, Garcia AD, Desu HL, Brambilla R, Johansen TN, Popowicz GM, Sattler M, Gajhede M, Bach A (2021)
Deconstructing Noncovalent Kelch-like ECH-Associated Protein 1 (Keap1) Inhibitors into Fragments to Reconstruct New Potent Compounds.
Journal of medicinal chemistry, Issue 8, Vol. 64, 4623-4661
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Munshaw S, Bruche S, Redpath AN, Jones A, Patel J, Dubé KN, Lee R, Hester SS, Davies R, Neal G, Handa A, Sattler M, Fischer R, Channon KM, Smart N (2021)
Thymosin β4 protects against aortic aneurysm via endocytic regulation of growth factor signaling.
The Journal of clinical investigation, Issue 10, Vol. 131, e127884
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Molitor L, Bacher S, Burczyk S, Niessing D (2021)
The Molecular Function of PURA and Its Implications in Neurological Diseases.
Frontiers in genetics, Vol. 12, 638217
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Liu N, O'Connor P, Gujrati V, Gorpas D, Glasl S, Blutke A, Walch A, Kleigrewe K, Sattler M, Plettenburg O, Ntziachristos V (2021)
Facile Synthesis of a Croconaine-Based Nanoformulation for Optoacoustic Imaging and Photothermal Therapy.
Advanced healthcare materials, Issue 9, Vol. 10, e2002115
DOI: 10.1002/adhm.202002115, PubMed: 33738974

Li G, Chen TW, Nickel AC, Muhammad S, Steiger HJ, Tzaridis T, Hänggi D, Zeidler R, Zhang W, Kahlert UD (2021)
Carbonic Anhydrase XII is a Clinically Significant, Molecular Tumor-Subtype Specific Therapeutic Target in Glioma with the Potential to Combat Invasion of Brain Tumor Cells.
OncoTargets and therapy, Vol. 14, 1707-1718
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Naarmann-de Vries IS, Senatore R, Moritz B, Marx G, Urlaub H, Niessing D, Ostareck DH, Ostareck-Lederer A (2021)
Methylated HNRNPK acts on RPS19 to regulate ALOX15 synthesis in erythropoiesis.
Nucleic acids research, Issue 6, Vol. 49, 3507-3523
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Alderson TR, Adriaenssens E, Asselbergh B, Pritišanac I, Van Lent J, Gastall HY, Wälti MA, Louis JM, Timmerman V, Baldwin AJ, Lp Benesch J (2021)
A weakened interface in the P182L variant of HSP27 associated with severe Charcot-Marie-Tooth neuropathy causes aberrant binding to interacting proteins.
The EMBO journal, Issue 8, Vol. 40, e103811
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Zhang M, Gui M, Wang ZF, Gorgulla C, Yu JJ, Wu H, Sun ZJ, Klenk C, Merklinger L, Morstein L, Hagn F, Plückthun A, Brown A, Nasr ML, Wagner G (2021)
Cryo-EM structure of an activated GPCR-G protein complex in lipid nanodiscs.
Nature structural & molecular biology, Issue 3, Vol. 28, 258-267
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Schuch LA, Forstner M, Rapp CK, Li Y, Smith DEC, Mendes MI, Delhommel F, Sattler M, Emiralioğlu N, Taskiran EZ, Orhan D, Kiper N, Rohlfs M, Jeske T, Hastreiter M, Gerstlauer M, Torrent-Vernetta A, Moreno-Galdó A, Kammer B, Brasch F, Reu-Hofer S, Griese M (2021)
FARS1-related disorders caused by bi-allelic mutations in cytosolic phenylalanyl-tRNA synthetase genes: Look beyond the lungs!
Clinical genetics, Issue 6, Vol. 99, 789-801
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Kleinstreuer NC, Tetko IV, Tong W (2021)
Introduction to Special Issue: Computational Toxicology.
Chemical research in toxicology, Issue 2, Vol. 34, 171-175
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Calonaci N, Jones A, Cuturello F, Sattler M, Bussi G (2020)
Machine learning a model for RNA structure prediction.
NAR genomics and bioinformatics, Issue 4, Vol. 2, lqaa090
DOI: 10.1093/nargab/lqaa090, PubMed: 33575634

Biebl MM, Lopez A, Rehn A, Freiburger L, Lawatscheck J, Blank B, Sattler M, Buchner J (2021)
Structural elements in the flexible tail of the co-chaperone p23 coordinate client binding and progression of the Hsp90 chaperone cycle.
Nature communications, Issue 1, Vol. 12, 828
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Alderson TR, Kay LE (2021)
NMR spectroscopy captures the essential role of dynamics in regulating biomolecular function.
Cell, Issue 3, Vol. 184, 577-595
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Kang HS, Sattler M (2018)
Capturing dynamic conformational shifts in protein-ligand recognition using integrative structural biology in solution.
Emerging topics in life sciences, Issue 1, Vol. 2, 107-119
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Wu L, Huang R, Tetko IV, Xia Z, Xu J, Tong W (2021)
Trade-off Predictivity and Explainability for Machine-Learning Powered Predictive Toxicology: An in-Depth Investigation with Tox21 Data Sets.
Chemical research in toxicology, Issue 2, Vol. 34, 541-549
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Reuter M, Kooshapur H, Suda JG, Gaussmann S, Neuhaus A, Brühl L, Bharti P, Jung M, Schliebs W, Sattler M, Erdmann R (2021)
Competitive Microtubule Binding of PEX14 Coordinates Peroxisomal Protein Import and Motility.
Journal of molecular biology, Issue 5, Vol. 433, 166765
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Karpov P, Godin G, Tetko IV (2020)
Transformer-CNN: Swiss knife for QSAR modeling and interpretation.
Journal of cheminformatics, Issue 1, Vol. 12, 17
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van Deursen R, Ertl P, Tetko IV, Godin G (2020)
GEN: highly efficient SMILES explorer using autodidactic generative examination networks.
Journal of cheminformatics, Issue 1, Vol. 12, 22
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Semenyuta IV, Trush MM, Kovalishyn VV, Rogalsky SP, Hodyna DM, Karpov P, Xia Z, Tetko IV, Metelytsia LO (2021)
Structure-Activity Relationship Modeling and Experimental Validation of the Imidazolium and Pyridinium Based Ionic Liquids as Potential Antibacterials of MDR Acinetobacter Baumannii and Staphylococcus Aureus.
International journal of molecular sciences, Issue 2, Vol. 22
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Savitskiy S, Wachtel R, Pourjafar-Dehkordi D, Kang HS, Trauschke V, Lamb DC, Sattler M, Zacharias M, Itzen A (2021)
Proteolysis of Rab32 by Salmonella GtgE induces an inactive GTPase conformation.
iScience, Issue 1, Vol. 24, 101940
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Tetko IV, Engkvist O (2020)
From Big Data to Artificial Intelligence: chemoinformatics meets new challenges.
Journal of cheminformatics, Issue 1, Vol. 12, 74
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Liwocha J, Krist DT, van der Heden van Noort GJ, Hansen FM, Truong VH, Karayel O, Purser N, Houston D, Burton N, Bostock MJ, Sattler M, Mann M, Harrison JS, Kleiger G, Ovaa H, Schulman BA (2021)
Linkage-specific ubiquitin chain formation depends on a lysine hydrocarbon ruler.
Nature chemical biology, Issue 3, Vol. 17, 272-279
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Jagtap PKA, Kubelka T, Soni K, Will CL, Garg D, Sippel C, Kapp TG, Potukuchi HK, Schorpp K, Hadian K, Kessler H, Lührmann R, Hausch F, Bach T, Sattler M (2020)
Identification of phenothiazine derivatives as UHM-binding inhibitors of early spliceosome assembly.
Nature communications, Issue 1, Vol. 11, 5621
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Kolonko M, Bystranowska D, Taube M, Kozak M, Bostock M, Popowicz G, Ożyhar A, Greb-Markiewicz B (2020)
The intrinsically disordered region of GCE protein adopts a more fixed structure by interacting with the LBD of the nuclear receptor FTZ-F1.
Cell communication and signaling : CCS, Issue 1, Vol. 18, 180
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Tetko IV, Karpov P, Van Deursen R, Godin G (2020)
State-of-the-art augmented NLP transformer models for direct and single-step retrosynthesis.
Nature communications, Issue 1, Vol. 11, 5575
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López A, Elimelech AR, Klimm K, Sattler M (2021)
The Charged Linker Modulates the Conformations and Molecular Interactions of Hsp90.
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Identifying potential endocrine disruptors among industrial chemicals and their metabolites--development and evaluation of in silico tools.
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Abdelaziz A, Sushko Y, Novotarskyi S, Körner R, Brandmaier S, Tetko IV (2015)
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A C-terminal HSP90 inhibitor restores glucocorticoid sensitivity and relieves a mouse allograft model of Cushing disease.
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Hennig J, Militti C, Popowicz GM, Wang I, Sonntag M, Geerlof A, Gabel F, Gebauer F, Sattler M (2014)
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Jansen RP, Niessing D, Baumann S, Feldbrügge M (2014)
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A residue-specific shift in stability and amyloidogenicity of antibody variable domains.
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Schlundt A, Heinz GA, Janowski R, Geerlof A, Stehle R, Heissmeyer V, Niessing D, Sattler M (2014)
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Experimental and theoretical studies in the EU FP7 Marie Curie Initial Training Network Project, Environmental ChemOinformatics (ECO).
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Kireeva NV, Ovchinnikova SI, Tetko IV, Asiri AM, Balakin KV, Tsivadze AY (2014)
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Pustelny K, Zdzalik M, Stach N, Stec-Niemczyk J, Cichon P, Czarna A, Popowicz G, Mak P, Drag M, Salvesen GS, Wladyka B, Potempa J, Dubin A, Dubin G (2014)
Staphylococcal SplB serine protease utilizes a novel molecular mechanism of activation.
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Hennig J, Sattler M (2014)
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Wang I, Hennig J, Jagtap PK, Sonntag M, Valcárcel J, Sattler M (2014)
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Vojnic E, Mourão A, Seizl M, Simon B, Wenzeck L, Larivière L, Baumli S, Baumgart K, Meisterernst M, Sattler M, Cramer P (2011)
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Popowicz GM, Dömling A, Holak TA (2011)
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Battke C, Kremmer E, Mysliwietz J, Gondi G, Dumitru C, Brandau S, Lang S, Vullo D, Supuran C, Zeidler R (2011)
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Battke C, Ruiss R, Welsch U, Wimberger P, Lang S, Jochum S, Zeidler R (2011)
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Dasari M, Espargaro A, Sabate R, Lopez del Amo JM, Fink U, Grelle G, Bieschke J, Ventura S, Reif B (2011)
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Christian F, Szaszák M, Friedl S, Drewianka S, Lorenz D, Goncalves A, Furkert J, Vargas C, Schmieder P, Götz F, Zühlke K, Moutty M, Göttert H, Joshi M, Reif B, Haase H, Morano I, Grossmann S, Klukovits A, Verli J, Gáspár R, Noack C, Bergmann M, Kass R, Hampel K, Kashin D, Genieser HG, Herberg FW, Willoughby D, Cooper DM, Baillie GS, Houslay MD, von Kries JP, Zimmermann B, Rosenthal W, Klussmann E (2011)
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Sushko I, Novotarskyi S, Körner R, Pandey AK, Cherkasov A, Li J, Gramatica P, Hansen K, Schroeter T, Müller KR, Xi L, Liu H, Yao X, Öberg T, Hormozdiari F, Dao P, Sahinalp C, Todeschini R, Polishchuk P, Artemenko A, Kuz'min V, Martin TM, Young DM, Fourches D, Muratov E, Tropsha A, Baskin I, Horvath D, Marcou G, Muller C, Varnek A, Prokopenko VV, Tetko IV (2010)
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Bhushan S, Meyer H, Starosta AL, Becker T, Mielke T, Berninghausen O, Sattler M, Wilson DN, Beckmann R (2010)
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Friberg A, Oddone A, Klymenko T, Müller J, Sattler M (2010)
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Meyer NH, Tripsianes K, Vincendeau M, Madl T, Kateb F, Brack-Werner R, Sattler M (2010)
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Czarna A, Beck B, Srivastava S, Popowicz GM, Wolf S, Huang Y, Bista M, Holak TA, Dömling A (2010)
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Ducka AM, Joel P, Popowicz GM, Trybus KM, Schleicher M, Noegel AA, Huber R, Holak TA, Sitar T (2010)
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Hagn F, Eisoldt L, Hardy JG, Vendrely C, Coles M, Scheibel T, Kessler H (2010)
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Heuck A, Fetka I, Brewer DN, Hüls D, Munson M, Jansen RP, Niessing D (2010)
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Mourão A, Varrot A, Mackereth CD, Cusack S, Sattler M (2010)
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Popowicz GM, Czarna A, Wolf S, Wang K, Wang W, Dömling A, Holak TA (2010)
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Retzlaff M, Hagn F, Mitschke L, Hessling M, Gugel F, Kessler H, Richter K, Buchner J (2010)
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NMR assignments of the periplasmic loop P2 of the MalF subunit of the maltose ATP binding cassette transporter.
Biomolecular NMR assignments, Issue 1, Vol. 3, 21-3
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Rumpf J, Simon B, Groemping Y, Sattler M (2008)
1H, 13C, and 15N chemical shift assignments for the Eps15-EH2-stonin 2 complex.
Biomolecular NMR assignments, Issue 1, Vol. 2, 55-8
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Corsini L, Sattler M (2008)
Backbone assignment of the UHM domain of Puf60 free and bound to five ligands.
Biomolecular NMR assignments, Issue 2, Vol. 2, 211-4
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Chevelkov V, Fink U, Reif B (2009)
Quantitative analysis of backbone motion in proteins using MAS solid-state NMR spectroscopy.
Journal of biomolecular NMR, Issue 1-2, Vol. 45, 197-206
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Clerici M, Mourão A, Gutsche I, Gehring NH, Hentze MW, Kulozik A, Kadlec J, Sattler M, Cusack S (2009)
Unusual bipartite mode of interaction between the nonsense-mediated decay factors, UPF1 and UPF2.
The EMBO journal, Issue 15, Vol. 28, 2293-306
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Thoms S, Max KE, Wunderlich M, Jacso T, Lilie H, Reif B, Heinemann U, Schmid FX (2009)
Dimer formation of a stabilized Gbeta1 variant: a structural and energetic analysis.
Journal of molecular biology, Issue 5, Vol. 391, 918-32
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Madl T, Sattler M (2009)
Adhesion dance with raver.
Structure (London, England : 1993), Issue 6, Vol. 17, 781-3
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Spichty M, Taly A, Hagn F, Kessler H, Barluenga S, Winssinger N, Karplus M (2009)
The HSP90 binding mode of a radicicol-like E-oxime determined by docking, binding free energy estimations, and NMR 15N chemical shifts.
Biophysical chemistry, Issue 3, Vol. 143, 111-23
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Czarna A, Popowicz GM, Pecak A, Wolf S, Dubin G, Holak TA (2009)
High affinity interaction of the p53 peptide-analogue with human Mdm2 and Mdmx.
Cell cycle (Georgetown, Tex.), Issue 8, Vol. 8, 1176-84
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Friberg A, Corsini L, Mourão A, Sattler M (2009)
Structure and ligand binding of the extended Tudor domain of D. melanogaster Tudor-SN.
Journal of molecular biology, Issue 4, Vol. 387, 921-34
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Neufeld C, Filipp FV, Simon B, Neuhaus A, Schüller N, David C, Kooshapur H, Madl T, Erdmann R, Schliebs W, Wilmanns M, Sattler M (2009)
Structural basis for competitive interactions of Pex14 with the import receptors Pex5 and Pex19.
The EMBO journal, Issue 6, Vol. 28, 745-54
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Stec-Niemczyk J, Pustelny K, Kisielewska M, Bista M, Boulware KT, Stennicke HR, Thogersen IB, Daugherty PS, Enghild JJ, Baczynski K, Popowicz GM, Dubin A, Potempa J, Dubin G (2009)
Structural and functional characterization of SplA, an exclusively specific protease of Staphylococcus aureus.
The Biochemical journal, Issue 3, Vol. 419, 555-64
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Jacso T, Grote M, Daus ML, Schmieder P, Keller S, Schneider E, Reif B (2009)
Periplasmic loop P2 of the MalF subunit of the maltose ATP binding cassette transporter is sufficient to bind the maltose binding protein MalE.
Biochemistry, Issue 10, Vol. 48, 2216-25
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Varnek A, Gaudin C, Marcou G, Baskin I, Pandey AK, Tetko IV (2009)
Inductive transfer of knowledge: application of multi-task learning and feature net approaches to model tissue-air partition coefficients.
Journal of chemical information and modeling, Issue 1, Vol. 49, 133-44
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Zuckerman V, Lenos K, Popowicz GM, Silberman I, Grossman T, Marine JC, Holak TA, Jochemsen AG, Haupt Y (2009)
c-Abl phosphorylates Hdmx and regulates its interaction with p53.
The Journal of biological chemistry, Issue 6, Vol. 284, 4031-9
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Bergmann C, Strauss L, Wieckowski E, Czystowska M, Albers A, Wang Y, Zeidler R, Lang S, Whiteside TL (2009)
Tumor-derived microvesicles in sera of patients with head and neck cancer and their role in tumor progression.
Head & neck, Issue 3, Vol. 31, 371-80
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Agarwal V, Faelber K, Schmieder P, Reif B (2009)
High-resolution double-quantum deuterium magic angle spinning solid-state NMR spectroscopy of perdeuterated proteins.
Journal of the American Chemical Society, Issue 1, Vol. 131, 2-3
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Tetko IV (2008)
Associative neural network.
Methods in molecular biology (Clifton, N.J.), Vol. 458, 185-202
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Agarwal V, Xue Y, Reif B, Skrynnikov NR (2008)
Protein side-chain dynamics as observed by solution- and solid-state NMR spectroscopy: a similarity revealed.
Journal of the American Chemical Society, Issue 49, Vol. 130, 16611-21
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Duszczyk MM, Zanier K, Sattler M (2008)
A NMR strategy to unambiguously distinguish nucleic acid hairpin and duplex conformations applied to a Xist RNA A-repeat.
Nucleic acids research, Issue 22, Vol. 36, 7068-77
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Bogomolovas J, Simon B, Sattler M, Stier G (2009)
Screening of fusion partners for high yield expression and purification of bioactive viscotoxins.
Protein expression and purification, Issue 1, Vol. 64, 16-23
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Corsini L, Hothorn M, Stier G, Rybin V, Scheffzek K, Gibson TJ, Sattler M (2009)
Dimerization and protein binding specificity of the U2AF homology motif of the splicing factor Puf60.
The Journal of biological chemistry, Issue 1, Vol. 284, 630-639
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Radzimanowski J, Simon B, Sattler M, Beyreuther K, Sinning I, Wild K (2008)
Structure of the intracellular domain of the amyloid precursor protein in complex with Fe65-PTB2.
EMBO reports, Issue 11, Vol. 9, 1134-40
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Corsini L, Hothorn M, Scheffzek K, Sattler M, Stier G (2008)
Thioredoxin as a fusion tag for carrier-driven crystallization.
Protein science : a publication of the Protein Society, Issue 12, Vol. 17, 2070-9
DOI: 10.1110/ps.037564.108, PubMed: 18780816

Elstner M, Andreoli C, Ahting U, Tetko I, Klopstock T, Meitinger T, Prokisch H (2008)
MitoP2: an integrative tool for the analysis of the mitochondrial proteome.
Molecular biotechnology, Issue 3, Vol. 40, 306-15
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Tetko IV, Sushko I, Pandey AK, Zhu H, Tropsha A, Papa E, Oberg T, Todeschini R, Fourches D, Varnek A (2008)
Critical assessment of QSAR models of environmental toxicity against Tetrahymena pyriformis: focusing on applicability domain and overfitting by variable selection.
Journal of chemical information and modeling, Issue 9, Vol. 48, 1733-46
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Surmeli D, Ratmann O, Mewes HW, Tetko IV (2008)
FunCat functional inference with belief propagation and feature integration.
Computational biology and chemistry, Issue 5, Vol. 32, 375-7
DOI: 10.1016/j.compbiolchem.2008.06.004, PubMed: 18684672

Mannhold R, Poda GI, Ostermann C, Tetko IV (2009)
Calculation of molecular lipophilicity: State-of-the-art and comparison of log P methods on more than 96,000 compounds.
Journal of pharmaceutical sciences, Issue 3, Vol. 98, 861-93
DOI: 10.1002/jps.21494, PubMed: 18683876

Rothweiler U, Czarna A, Weber L, Popowicz GM, Brongel K, Kowalska K, Orth M, Stemmann O, Holak TA (2008)
NMR screening for lead compounds using tryptophan-mutated proteins.
Journal of medicinal chemistry, Issue 16, Vol. 51, 5035-42
DOI: 10.1021/jm8002813, PubMed: 18680271

Popowicz GM, Czarna A, Holak TA (2008)
Structure of the human Mdmx protein bound to the p53 tumor suppressor transactivation domain.
Cell cycle (Georgetown, Tex.), Issue 15, Vol. 7, 2441-3
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Agarwal V, Reif B (2008)
Residual methyl protonation in perdeuterated proteins for multi-dimensional correlation experiments in MAS solid-state NMR spectroscopy.
Journal of magnetic resonance (San Diego, Calif. : 1997), Issue 1, Vol. 194, 16-24
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Du TG, Jellbauer S, Müller M, Schmid M, Niessing D, Jansen RP (2008)
Nuclear transit of the RNA-binding protein She2 is required for translational control of localized ASH1 mRNA.
EMBO reports, Issue 8, Vol. 9, 781-7
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Linser R, Fink U, Reif B (2008)
Proton-detected scalar coupling based assignment strategies in MAS solid-state NMR spectroscopy applied to perdeuterated proteins.
Journal of magnetic resonance (San Diego, Calif. : 1997), Issue 1, Vol. 193, 89-93
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Dubin G, Stec-Niemczyk J, Kisielewska M, Pustelny K, Popowicz GM, Bista M, Kantyka T, Boulware KT, Stennicke HR, Czarna A, Phopaisarn M, Daugherty PS, Thøgersen IB, Enghild JJ, Thornberry N, Dubin A, Potempa J (2008)
Enzymatic activity of the Staphylococcus aureus SplB serine protease is induced by substrates containing the sequence Trp-Glu-Leu-Gln.
Journal of molecular biology, Issue 2, Vol. 379, 343-56
DOI: 10.1016/j.jmb.2008.03.059, PubMed: 18448121

Zhu H, Tropsha A, Fourches D, Varnek A, Papa E, Gramatica P, Oberg T, Dao P, Cherkasov A, Tetko IV (2008)
Combinatorial QSAR modeling of chemical toxicants tested against Tetrahymena pyriformis.
Journal of chemical information and modeling, Issue 4, Vol. 48, 766-84
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Tetko IV, Jaroszewicz I, Platts JA, Kuduk-Jaworska J (2008)
Calculation of lipophilicity for Pt(II) complexes: experimental comparison of several methods.
Journal of inorganic biochemistry, Issue 7, Vol. 102, 1424-37
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Spadaccini R, Perrin H, Bottomley MJ, Ansieau S, Sattler M (2008)
Retraction notice to "Structure and functional analysis of the MYND domain" [J. Mol. Biol. (2006) 358, 498-508].
Journal of molecular biology, Issue 5, Vol. 376, 1523
DOI: 10.1016/j.jmb.2008.01.071, PubMed: 18286714

Chevelkov V, Diehl A, Reif B (2008)
Measurement of 15N-T1 relaxation rates in a perdeuterated protein by magic angle spinning solid-state nuclear magnetic resonance spectroscopy.
The Journal of chemical physics, Issue 5, Vol. 128, 052316
DOI: 10.1063/1.2819311, PubMed: 18266433

Wiesner M, Zentz C, Mayr C, Wimmer R, Hammerschmidt W, Zeidler R, Moosmann A (2008)
Conditional immortalization of human B cells by CD40 ligation.
PloS one, Issue 1, Vol. 3, e1464
DOI: 10.1371/journal.pone.0001464, PubMed: 18213373

Rumpf J, Simon B, Jung N, Maritzen T, Haucke V, Sattler M, Groemping Y (2008)
Structure of the Eps15-stonin2 complex provides a molecular explanation for EH-domain ligand specificity.
The EMBO journal, Issue 3, Vol. 27, 558-69
DOI: 10.1038/sj.emboj.7601980, PubMed: 18200045

Kaden D, Munter LM, Joshi M, Treiber C, Weise C, Bethge T, Voigt P, Schaefer M, Beyermann M, Reif B, Multhaup G (2008)
Homophilic interactions of the amyloid precursor protein (APP) ectodomain are regulated by the loop region and affect beta-secretase cleavage of APP.
The Journal of biological chemistry, Issue 11, Vol. 283, 7271-9
DOI: 10.1074/jbc.M708046200, PubMed: 18182389

Tetko IV, Rodchenkov IV, Walter MC, Rattei T, Mewes HW (2008)
Beyond the 'best' match: machine learning annotation of protein sequences by integration of different sources of information.
Bioinformatics (Oxford, England), Issue 5, Vol. 24, 621-8
DOI: 10.1093/bioinformatics/btm633, PubMed: 18174184

Chevelkov V, Diehl A, Reif B (2007)
Quantitative measurement of differential 15N-H(alpha/beta)T2 relaxation rates in a perdeuterated protein by MAS solid-state NMR spectroscopy.
Magnetic resonance in chemistry : MRC, Vol. 45 Suppl 1, S156-60
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Heuck A, Du TG, Jellbauer S, Richter K, Kruse C, Jaklin S, Müller M, Buchner J, Jansen RP, Niessing D (2007)
Monomeric myosin V uses two binding regions for the assembly of stable translocation complexes.
Proceedings of the National Academy of Sciences of the United States of America, Issue 50, Vol. 104, 19778-83
DOI: 10.1073/pnas.0706780104, PubMed: 18056806

Black SL, Stanley WA, Filipp FV, Bhairo M, Verma A, Wichmann O, Sattler M, Wilmanns M, Schultz C (2008)
Probing lipid- and drug-binding domains with fluorescent dyes.
Bioorganic & medicinal chemistry, Issue 3, Vol. 16, 1162-73
DOI: 10.1016/j.bmc.2007.10.080, PubMed: 18024138

Albermann K, Lang S, Zeidler R (2007)
Molecular profiling for the identification of new biomarkers in smokers and cancer patients.
Cancer genomics & proteomics, Issue 5, Vol. 4, 349-58
PubMed: 17993719

Agarwal V, Fink U, Schuldiner S, Reif B (2007)
MAS solid-state NMR studies on the multidrug transporter EmrE.
Biochimica et biophysica acta, Issue 12, Vol. 1768, 3036-43
DOI: 10.1016/j.bbamem.2007.09.012, PubMed: 17976529

Popowicz GM, Czarna A, Rothweiler U, Szwagierczak A, Krajewski M, Weber L, Holak TA (2007)
Molecular basis for the inhibition of p53 by Mdmx.
Cell cycle (Georgetown, Tex.), Issue 19, Vol. 6, 2386-92
DOI: 10.4161/cc.6.19.4740, PubMed: 17938582

Linser R, Chevelkov V, Diehl A, Reif B (2007)
Sensitivity enhancement using paramagnetic relaxation in MAS solid-state NMR of perdeuterated proteins.
Journal of magnetic resonance (San Diego, Calif. : 1997), Issue 2, Vol. 189, 209-16
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Chevelkov V, Zhuravleva AV, Xue Y, Reif B, Skrynnikov NR (2007)
Combined analysis of (15)N relaxation data from solid- and solution-state NMR spectroscopy.
Journal of the American Chemical Society, Issue 42, Vol. 129, 12594-5
DOI: 10.1021/ja073234s, PubMed: 17902660

Bergmann C, Strauss L, Zeidler R, Lang S, Whiteside TL (2007)
Expansion of human T regulatory type 1 cells in the microenvironment of cyclooxygenase 2 overexpressing head and neck squamous cell carcinoma.
Cancer research, Issue 18, Vol. 67, 8865-73
DOI: 10.1158/0008-5472.CAN-07-0767, PubMed: 17875728

Zeidler R, Albermann K, Lang S (2007)
Nicotine and apoptosis.
Apoptosis : an international journal on programmed cell death, Issue 11, Vol. 12, 1927-43
DOI: 10.1007/s10495-007-0102-8, PubMed: 17846896

Cuomo CA, Güldener U, Xu JR, Trail F, Turgeon BG, Di Pietro A, Walton JD, Ma LJ, Baker SE, Rep M, Adam G, Antoniw J, Baldwin T, Calvo S, Chang YL, Decaprio D, Gale LR, Gnerre S, Goswami RS, Hammond-Kosack K, Harris LJ, Hilburn K, Kennell JC, Kroken S, Magnuson JK, Mannhaupt G, Mauceli E, Mewes HW, Mitterbauer R, Muehlbauer G, Münsterkötter M, Nelson D, O'donnell K, Ouellet T, Qi W, Quesneville H, Roncero MI, Seong KY, Tetko IV, Urban M, Waalwijk C, Ward TJ, Yao J, Birren BW, Kistler HC (2007)
The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization.
Science (New York, N.Y.), Issue 5843, Vol. 317, 1400-2
DOI: 10.1126/science.1143708, PubMed: 17823352

Chevelkov V, Faelber K, Schrey A, Rehbein K, Diehl A, Reif B (2007)
Differential line broadening in MAS solid-state NMR due to dynamic interference.
Journal of the American Chemical Society, Issue 33, Vol. 129, 10195-200
DOI: 10.1021/ja072024c, PubMed: 17663552

Corsini L, Bonnal S, Basquin J, Hothorn M, Scheffzek K, Valcárcel J, Sattler M (2007)
U2AF-homology motif interactions are required for alternative splicing regulation by SPF45.
Nature structural & molecular biology, Issue 7, Vol. 14, 620-9
DOI: 10.1038/nsmb1260, PubMed: 17589525

Singh M, Popowicz GM, Krajewski M, Holak TA (2007)
Structural ramification for acetyl-lysine recognition by the bromodomain of human BRG1 protein, a central ATPase of the SWI/SNF remodeling complex.
Chembiochem : a European journal of chemical biology, Issue 11, Vol. 8, 1308-16
DOI: 10.1002/cbic.200600562, PubMed: 17582821

Filipp FV, Sattler M (2007)
Conformational plasticity of the lipid transfer protein SCP2.
Biochemistry, Issue 27, Vol. 46, 7980-91
DOI: 10.1021/bi6025616, PubMed: 17566986

Xue Y, Pavlova MS, Ryabov YE, Reif B, Skrynnikov NR (2007)
Methyl rotation barriers in proteins from 2H relaxation data. Implications for protein structure.
Journal of the American Chemical Society, Issue 21, Vol. 129, 6827-38
DOI: 10.1021/ja0702061, PubMed: 17488010

Kovalishyn VV, Kholodovych V, Tetko IV, Welsh WJ (2007)
Volume learning algorithm significantly improved PLS model for predicting the estrogenic activity of xenoestrogens.
Journal of molecular graphics & modelling, Issue 2, Vol. 26, 591-4
DOI: 10.1016/j.jmgm.2007.03.005, PubMed: 17433745

Brumbaugh J, Schleifenbaum A, Stier G, Sattler M, Schultz C (2006)
Single- and dual-parameter FRET kinase probes based on pleckstrin.
Nature protocols, Issue 2, Vol. 1, 1044-55
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Lang S, Tiwari S, Andratschke M, Loehr I, Lauffer L, Bergmann C, Mack B, Lebeau A, Moosmann A, Whiteside TL, Zeidler R (2007)
Immune restoration in head and neck cancer patients after in vivo COX-2 inhibition.
Cancer immunology, immunotherapy : CII, Issue 10, Vol. 56, 1645-52
DOI: 10.1007/s00262-007-0312-5, PubMed: 17387473

Varnek A, Kireeva N, Tetko IV, Baskin II, Solov'ev VP (2007)
Exhaustive QSPR studies of a large diverse set of ionic liquids: how accurately can we predict melting points?
Journal of chemical information and modeling, Issue 3, Vol. 47, 1111-22
DOI: 10.1021/ci600493x, PubMed: 17381081

Andratschke M, Gildehaus FJ, Johannson V, Schmitt B, Mack B, Reisbach G, Lang S, Lindhofer H, Zeidler R, Wollenberg B, Luebbers CW (2007)
Biodistribution and radioimmunotherapy of SCCHN in xenotransplantated SCID mice with a 131I-labelled anti-EpCAM monoclonal antibody.
Anticancer research, Issue 1A, Vol. 27, 431-6
PubMed: 17352264

Zentz C, Wiesner M, Man S, Frankenberger B, Wollenberg B, Hillemanns P, Zeidler R, Hammerschmidt W, Moosmann A (2007)
Activated B cells mediate efficient expansion of rare antigen-specific T cells.
Human immunology, Issue 2, Vol. 68, 75-85
DOI: 10.1016/j.humimm.2006.12.004, PubMed: 17321896

Corsini L, Sattler M (2007)
Tudor hooks up with DNA repair.
Nature structural & molecular biology, Issue 2, Vol. 14, 98-9
DOI: 10.1038/nsmb0207-98, PubMed: 17277801

Farré-Castany MA, Schwaller B, Gregory P, Barski J, Mariethoz C, Eriksson JL, Tetko IV, Wolfer D, Celio MR, Schmutz I, Albrecht U, Villa AE (2007)
Differences in locomotor behavior revealed in mice deficient for the calcium-binding proteins parvalbumin, calbindin D-28k or both.
Behavioural brain research, Issue 2, Vol. 178, 250-61
DOI: 10.1016/j.bbr.2007.01.002, PubMed: 17275105

Bergmann C, Strauss L, Zeidler R, Lang S, Whiteside TL (2007)
Expansion and characteristics of human T regulatory type 1 cells in co-cultures simulating tumor microenvironment.
Cancer immunology, immunotherapy : CII, Issue 9, Vol. 56, 1429-42
DOI: 10.1007/s00262-007-0280-9, PubMed: 17265021

Emmersen J, Rudd S, Mewes HW, Tetko IV (2007)
Separation of sequences from host-pathogen interface using triplet nucleotide frequencies.
Fungal genetics and biology : FG & B, Issue 4, Vol. 44, 231-41
DOI: 10.1016/j.fgb.2006.11.010, PubMed: 17218127

Verdoodt B, Benzinger A, Popowicz GM, Holak TA, Hermeking H (2006)
Characterization of 14-3-3sigma dimerization determinants: requirement of homodimerization for inhibition of cell proliferation.
Cell cycle (Georgetown, Tex.), Issue 24, Vol. 5, 2920-6
DOI: 10.4161/cc.5.24.3571, PubMed: 17172876

Oddone A, Lorentzen E, Basquin J, Gasch A, Rybin V, Conti E, Sattler M (2007)
Structural and biochemical characterization of the yeast exosome component Rrp40.
EMBO reports, Issue 1, Vol. 8, 63-9
DOI: 10.1038/sj.embor.7400856, PubMed: 17159918

Stanley WA, Filipp FV, Kursula P, Schüller N, Erdmann R, Schliebs W, Sattler M, Wilmanns M (2006)
Recognition of a functional peroxisome type 1 target by the dynamic import receptor pex5p.
Molecular cell, Issue 5, Vol. 24, 653-663
DOI: 10.1016/j.molcel.2006.10.024, PubMed: 17157249

Feige MJ, Hagn F, Esser J, Kessler H, Buchner J (2007)
Influence of the internal disulfide bridge on the folding pathway of the CL antibody domain.
Journal of molecular biology, Issue 4, Vol. 365, 1232-44
DOI: 10.1016/j.jmb.2006.10.049, PubMed: 17112539

Narayanan S, Kamps B, Boelens WC, Reif B (2006)
alphaB-crystallin competes with Alzheimer's disease beta-amyloid peptide for peptide-peptide interactions and induces oxidation of Abeta-Met35.
FEBS letters, Issue 25, Vol. 580, 5941-6
DOI: 10.1016/j.febslet.2006.09.063, PubMed: 17046756

Heller M, Sukopp M, Tsomaia N, John M, Mierke DF, Reif B, Kessler H (2006)
The conformation of cyclo(-D-Pro-Ala4-) as a model for cyclic pentapeptides of the DL4 type.
Journal of the American Chemical Society, Issue 42, Vol. 128, 13806-14
DOI: 10.1021/ja063174a, PubMed: 17044709

Agarwal V, Diehl A, Skrynnikov N, Reif B (2006)
High resolution 1H detected 1H,13C correlation spectra in MAS solid-state NMR using deuterated proteins with selective 1H,2H isotopic labeling of methyl groups.
Journal of the American Chemical Society, Issue 39, Vol. 128, 12620-1
DOI: 10.1021/ja064379m, PubMed: 17002335

Reif B, Xue Y, Agarwal V, Pavlova MS, Hologne M, Diehl A, Ryabov YE, Skrynnikov NR (2006)
Protein side-chain dynamics observed by solution- and solid-state NMR: comparative analysis of methyl 2H relaxation data.
Journal of the American Chemical Society, Issue 38, Vol. 128, 12354-5
DOI: 10.1021/ja062808a, PubMed: 16984151

Ahlemann M, Zeidler R, Lang S, Mack B, Münz M, Gires O (2006)
Carcinoma-associated eIF3i overexpression facilitates mTOR-dependent growth transformation.
Molecular carcinogenesis, Issue 12, Vol. 45, 957-67
DOI: 10.1002/mc.20269, PubMed: 16929481

Sitar T, Popowicz GM, Siwanowicz I, Huber R, Holak TA (2006)
Structural basis for the inhibition of insulin-like growth factors by insulin-like growth factor-binding proteins.
Proceedings of the National Academy of Sciences of the United States of America, Issue 35, Vol. 103, 13028-33
DOI: 10.1073/pnas.0605652103, PubMed: 16924115

Messias AC, Harnisch C, Ostareck-Lederer A, Sattler M, Ostareck DH (2006)
The DICE-binding activity of KH domain 3 of hnRNP K is affected by c-Src-mediated tyrosine phosphorylation.
Journal of molecular biology, Issue 3, Vol. 361, 470-81
DOI: 10.1016/j.jmb.2006.06.025, PubMed: 16854432

Tetko IV, Bruneau P, Mewes HW, Rohrer DC, Poda GI (2006)
Can we estimate the accuracy of ADME-Tox predictions?
Drug discovery today, Issue 15-16, Vol. 11, 700-7
DOI: 10.1016/j.drudis.2006.06.013, PubMed: 16846797

Soares LM, Zanier K, Mackereth C, Sattler M, Valcárcel J (2006)
Intron removal requires proofreading of U2AF/3' splice site recognition by DEK.
Science (New York, N.Y.), Issue 5782, Vol. 312, 1961-5
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Popowicz GM, Schleicher M, Noegel AA, Holak TA (2006)
Filamins: promiscuous organizers of the cytoskeleton.
Trends in biochemical sciences, Issue 7, Vol. 31, 411-9
DOI: 10.1016/j.tibs.2006.05.006, PubMed: 16781869

Ahlemann M, Schmitt B, Stieber P, Gires O, Lang S, Zeidler R (2006)
Evaluation of CK8-specific autoantibodies in carcinomas of distinct localisations.
Anticancer research, Issue 1B, Vol. 26, 783-9
PubMed: 16739354

Lescrinier E, Nauwelaerts K, Zanier K, Poesen K, Sattler M, Herdewijn P (2006)
The naturally occurring N6-threonyl adenine in anticodon loop of Schizosaccharomyces pombe tRNAi causes formation of a unique U-turn motif.
Nucleic acids research, Issue 10, Vol. 34, 2878-86
DOI: 10.1093/nar/gkl081, PubMed: 16738127

Kang CB, Ye H, Vivekanandan S, Simon B, Sattler M, Yoon HS (2006)
Backbone 1H, 13C, and 15N resonance assignments of the N-terminal domain of FKBP38 (FKBP38NTD).
Journal of biomolecular NMR, Vol. 36 Suppl 1, 37
DOI: 10.1007/s10858-006-9001-5, PubMed: 16718587

Mikolajka A, Yan X, Popowicz GM, Smialowski P, Nigg EA, Holak TA (2006)
Structure of the N-terminal domain of the FOP (FGFR1OP) protein and implications for its dimerization and centrosomal localization.
Journal of molecular biology, Issue 4, Vol. 359, 863-75
DOI: 10.1016/j.jmb.2006.03.070, PubMed: 16690081

Chevelkov V, Rehbein K, Diehl A, Reif B (2006)
Ultrahigh resolution in proton solid-state NMR spectroscopy at high levels of deuteration.
Angewandte Chemie (International ed. in English), Issue 23, Vol. 45, 3878-81
DOI: 10.1002/anie.200600328, PubMed: 16646097

Edlich C, Simon B, Sattler M, Muhle-Goll C (2006)
New NMR assignment 1H, 13C, and 15N assignment of the second PH domain of human pleckstrin (234-350).
Journal of biomolecular NMR, Vol. 36 Suppl 1, 21
DOI: 10.1007/s10858-005-6053-x, PubMed: 16642402

Tetko IV, Haberer G, Rudd S, Meyers B, Mewes HW, Mayer KF (2006)
Spatiotemporal expression control correlates with intragenic scaffold matrix attachment regions (S/MARs) in Arabidopsis thaliana.
PLoS computational biology, Issue 3, Vol. 2, e21
DOI: 10.1371/journal.pcbi.0020021, PubMed: 16604187

Pimienta G, Gabel F, Zanier K, Conti E, Sattler M (2006)
Chemical shift backbone assignments of TAP-N, the 31 kDa cargo-binding region of the protein TAP.
Journal of biomolecular NMR, Vol. 36 Suppl 1, 23
DOI: 10.1007/s10858-006-0002-1, PubMed: 16596343

Narayanan S, Walter S, Reif B (2006)
Yeast prion-protein, sup35, fibril formation proceeds by addition and substraction of oligomers.
Chembiochem : a European journal of chemical biology, Issue 5, Vol. 7, 757-65
DOI: 10.1002/cbic.200500382, PubMed: 16570324

Tetko IV, Solov'ev VP, Antonov AV, Yao X, Doucet JP, Fan B, Hoonakker F, Fourches D, Jost P, Lachiche N, Varnek A (2006)
Benchmarking of linear and nonlinear approaches for quantitative structure-property relationship studies of metal complexation with ionophores.
Journal of chemical information and modeling, Issue 2, Vol. 46, 808-19
DOI: 10.1021/ci0504216, PubMed: 16563012

Spadaccini R, Perrin H, Bottomley MJ, Ansieau S, Sattler M (2006)
Structure and functional analysis of the MYND domain.
Journal of molecular biology, Issue 2, Vol. 358, 498-508
DOI: 10.1016/j.jmb.2006.01.087, PubMed: 16527309

Mapelli M, Filipp FV, Rancati G, Massimiliano L, Nezi L, Stier G, Hagan RS, Confalonieri S, Piatti S, Sattler M, Musacchio A (2006)
Determinants of conformational dimerization of Mad2 and its inhibition by p31comet.
The EMBO journal, Issue 6, Vol. 25, 1273-84
DOI: 10.1038/sj.emboj.7601033, PubMed: 16525508

Popowicz GM, Dubin G, Stec-Niemczyk J, Czarny A, Dubin A, Potempa J, Holak TA (2006)
Functional and structural characterization of Spl proteases from Staphylococcus aureus.
Journal of molecular biology, Issue 1, Vol. 358, 270-9
DOI: 10.1016/j.jmb.2006.01.098, PubMed: 16516230

Spadaccini R, Reidt U, Dybkov O, Will C, Frank R, Stier G, Corsini L, Wahl MC, Lührmann R, Sattler M (2006)
Biochemical and NMR analyses of an SF3b155-p14-U2AF-RNA interaction network involved in branch point definition during pre-mRNA splicing.
RNA (New York, N.Y.), Issue 3, Vol. 12, 410-25
DOI: 10.1261/rna.2271406, PubMed: 16495236

Andratschke M, Hagedorn H, Luebbers CW, Schmitt B, Lang S, Zeidler R, Wollenberg B (2006)
Limited suitability of EpCAM for molecular staging of tumor borders in head and neck cancer.
Anticancer research, Issue 1A, Vol. 26, 153-8
PubMed: 16475692

Balakin KV, Savchuk NP, Tetko IV (2006)
In silico approaches to prediction of aqueous and DMSO solubility of drug-like compounds: trends, problems and solutions.
Current medicinal chemistry, Issue 2, Vol. 13, 223-41
DOI: 10.2174/092986706775197917, PubMed: 16472214

Richter K, Moser S, Hagn F, Friedrich R, Hainzl O, Heller M, Schlee S, Kessler H, Reinstein J, Buchner J (2006)
Intrinsic inhibition of the Hsp90 ATPase activity.
The Journal of biological chemistry, Issue 16, Vol. 281, 11301-11
DOI: 10.1074/jbc.M510142200, PubMed: 16461354

Gabel F, Simon B, Sattler M (2006)
A target function for quaternary structural refinement from small angle scattering and NMR orientational restraints.
European biophysics journal : EBJ, Issue 4, Vol. 35, 313-27
DOI: 10.1007/s00249-005-0037-3, PubMed: 16416140

Antonov AV, Tetko IV, Mewes HW (2006)
A systematic approach to infer biological relevance and biases of gene network structures.
Nucleic acids research, Issue 1, Vol. 34, e6
DOI: 10.1093/nar/gnj002, PubMed: 16407322

Brumbaugh J, Schleifenbaum A, Gasch A, Sattler M, Schultz C (2006)
A dual parameter FRET probe for measuring PKC and PKA activity in living cells.
Journal of the American Chemical Society, Issue 1, Vol. 128, 24-5
DOI: 10.1021/ja0562200, PubMed: 16390103

Scholz C, Eckert B, Hagn F, Schaarschmidt P, Balbach J, Schmid FX (2006)
SlyD proteins from different species exhibit high prolyl isomerase and chaperone activities.
Biochemistry, Issue 1, Vol. 45, 20-33
DOI: 10.1021/bi051922n, PubMed: 16388577

Ruepp A, Doudieu ON, van den Oever J, Brauner B, Dunger-Kaltenbach I, Fobo G, Frishman G, Montrone C, Skornia C, Wanka S, Rattei T, Pagel P, Riley L, Frishman D, Surmeli D, Tetko IV, Oesterheld M, Stümpflen V, Mewes HW (2006)
The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context.
Nucleic acids research, Issue Database issue, Vol. 34, D568-71
DOI: 10.1093/nar/gkj074, PubMed: 16381934

Walz A, Andratschke M, Wollenberg B, Lindhofer H, Zeidler R (2005)
Prednisolone reduces TNF-alpha release by PBMCs activated with a trifunctional bispecific antibody but not their anti-tumor activity.
Anticancer research, Issue 6B, Vol. 25, 4239-43
PubMed: 16309222

Hologne M, Chen Z, Reif B (2006)
Characterization of dynamic processes using deuterium in uniformly 2H,13C,15N enriched peptides by MAS solid-state NMR.
Journal of magnetic resonance (San Diego, Calif. : 1997), Issue 1, Vol. 179, 20-8
DOI: 10.1016/j.jmr.2005.10.014, PubMed: 16289962

Vojnic E, Simon B, Strahl BD, Sattler M, Cramer P (2006)
Structure and carboxyl-terminal domain (CTD) binding of the Set2 SRI domain that couples histone H3 Lys36 methylation to transcription.
The Journal of biological chemistry, Issue 1, Vol. 281, 13-5
DOI: 10.1074/jbc.C500423200, PubMed: 16286474

Chen Z, Krause G, Reif B (2005)
Structure and orientation of peptide inhibitors bound to beta-amyloid fibrils.
Journal of molecular biology, Issue 4, Vol. 354, 760-76
DOI: 10.1016/j.jmb.2005.09.055, PubMed: 16271725

Lingel A, Simon B, Izaurralde E, Sattler M (2005)
The structure of the flock house virus B2 protein, a viral suppressor of RNA interference, shows a novel mode of double-stranded RNA recognition.
EMBO reports, Issue 12, Vol. 6, 1149-55
DOI: 10.1038/sj.embor.7400583, PubMed: 16270100

Tetko IV, Abagyan R, Oprea TI (2005)
Surrogate data--a secure way to share corporate data.
Journal of computer-aided molecular design, Issue 9-10, Vol. 19, 749-64
DOI: 10.1007/s10822-005-9013-3, PubMed: 16267691

Tetko IV (2005)
Computing chemistry on the web.
Drug discovery today, Issue 22, Vol. 10, 1497-500
DOI: 10.1016/S1359-6446(05)03584-1, PubMed: 16257371

Tetko IV, Gasteiger J, Todeschini R, Mauri A, Livingstone D, Ertl P, Palyulin VA, Radchenko EV, Zefirov NS, Makarenko AS, Tanchuk VY, Prokopenko VV (2005)
Virtual computational chemistry laboratory--design and description.
Journal of computer-aided molecular design, Issue 6, Vol. 19, 453-63
DOI: 10.1007/s10822-005-8694-y, PubMed: 16231203

Wiesner S, Hantschel O, Mackereth CD, Superti-Furga G, Sattler M (2005)
NMR Assignment Reveals an alpha-Helical Fold for the F-Actin Binding Domain of Human Bcr-Abl/c-Abl.
Journal of biomolecular NMR, Issue 4, Vol. 32, 335
DOI: 10.1007/s10858-005-8868-x, PubMed: 16211486

Arolas JL, Popowicz GM, Bronsoms S, Aviles FX, Huber R, Holak TA, Ventura S (2005)
Study of a major intermediate in the oxidative folding of leech carboxypeptidase inhibitor: contribution of the fourth disulfide bond.
Journal of molecular biology, Issue 4, Vol. 352, 961-75
DOI: 10.1016/j.jmb.2005.07.065, PubMed: 16126224

Hantschel O, Wiesner S, Güttler T, Mackereth CD, Rix LL, Mikes Z, Dehne J, Görlich D, Sattler M, Superti-Furga G (2005)
Structural basis for the cytoskeletal association of Bcr-Abl/c-Abl.
Molecular cell, Issue 4, Vol. 19, 461-73
DOI: 10.1016/j.molcel.2005.06.030, PubMed: 16109371

Hologne M, Faelber K, Diehl A, Reif B (2005)
Characterization of dynamics of perdeuterated proteins by MAS solid-state NMR.
Journal of the American Chemical Society, Issue 32, Vol. 127, 11208-9
DOI: 10.1021/ja051830l, PubMed: 16089426

Arolas JL, D'Silva L, Popowicz GM, Aviles FX, Holak TA, Ventura S (2005)
NMR structural characterization and computational predictions of the major intermediate in oxidative folding of leech carboxypeptidase inhibitor.
Structure (London, England : 1993), Issue 8, Vol. 13, 1193-202
DOI: 10.1016/j.str.2005.05.008, PubMed: 16084391

Mackereth CD, Simon B, Sattler M (2005)
Extending the size of protein-RNA complexes studied by nuclear magnetic resonance spectroscopy.
Chembiochem : a European journal of chemical biology, Issue 9, Vol. 6, 1578-84
DOI: 10.1002/cbic.200500106, PubMed: 16075426

Antonov AV, Tetko IV, Kosykh D, Surmeli D, Mewes HW (2005)
Exploiting scale-free information from expression data for cancer classification.
Computational biology and chemistry, Issue 4, Vol. 29, 288-93
DOI: 10.1016/j.compbiolchem.2005.06.004, PubMed: 16039906

Backe PH, Messias AC, Ravelli RB, Sattler M, Cusack S (2005)
X-ray crystallographic and NMR studies of the third KH domain of hnRNP K in complex with single-stranded nucleic acids.
Structure (London, England : 1993), Issue 7, Vol. 13, 1055-67
DOI: 10.1016/j.str.2005.04.008, PubMed: 16004877

Rudd S, Tetko IV (2005)
Eclair--a web service for unravelling species origin of sequences sampled from mixed host interfaces.
Nucleic acids research, Issue Web Server issue, Vol. 33, W724-7
DOI: 10.1093/nar/gki434, PubMed: 15980572

Wiesner M, Zentz C, Hammer MH, Cobbold M, Kern F, Kolb HJ, Hammerschmidt W, Zeidler R, Moosmann A (2005)
Selection of CMV-specific CD8+ and CD4+ T cells by mini-EBV-transformed B cell lines.
European journal of immunology, Issue 7, Vol. 35, 2110-21
DOI: 10.1002/eji.200425936, PubMed: 15971271

Arolas JL, Popowicz GM, Lorenzo J, Sommerhoff CP, Huber R, Aviles FX, Holak TA (2005)
The three-dimensional structures of tick carboxypeptidase inhibitor in complex with A/B carboxypeptidases reveal a novel double-headed binding mode.
Journal of molecular biology, Issue 3, Vol. 350, 489-98
DOI: 10.1016/j.jmb.2005.05.015, PubMed: 15961103

Chevelkov V, Faelber K, Diehl A, Heinemann U, Oschkinat H, Reif B (2005)
Detection of dynamic water molecules in a microcrystalline sample of the SH3 domain of alpha-spectrin by MAS solid-state NMR.
Journal of biomolecular NMR, Issue 4, Vol. 31, 295-310
DOI: 10.1007/s10858-005-1718-z, PubMed: 15928996

Münz M, Zeidler R, Gires O (2005)
The tumour-associated antigen EpCAM upregulates the fatty acid binding protein E-FABP.
Cancer letters, Issue 1, Vol. 225, 151-7
DOI: 10.1016/j.canlet.2004.11.048, PubMed: 15922867

Benzinger A, Popowicz GM, Joy JK, Majumdar S, Holak TA, Hermeking H (2005)
The crystal structure of the non-liganded 14-3-3sigma protein: insights into determinants of isoform specific ligand binding and dimerization.
Cell research, Issue 4, Vol. 15, 219-27
DOI: 10.1038/sj.cr.7290290, PubMed: 15857576

Markwick PR, Sprangers R, Sattler M (2005)
Local structure and anisotropic backbone dynamics from cross-correlated NMR relaxation in proteins.
Angewandte Chemie (International ed. in English), Issue 21, Vol. 44, 3232-7
DOI: 10.1002/anie.200462495, PubMed: 15844105

Tetko IV, Facius A, Ruepp A, Mewes HW (2005)
Super paramagnetic clustering of protein sequences.
BMC bioinformatics, Vol. 6, 82
DOI: 10.1186/1471-2105-6-82, PubMed: 15804359

Tetko IV, Brauner B, Dunger-Kaltenbach I, Frishman G, Montrone C, Fobo G, Ruepp A, Antonov AV, Surmeli D, Mewes HW (2005)
MIPS bacterial genomes functional annotation benchmark dataset.
Bioinformatics (Oxford, England), Issue 10, Vol. 21, 2520-1
DOI: 10.1093/bioinformatics/bti380, PubMed: 15769832

Lingel A, Sattler M (2005)
Novel modes of protein-RNA recognition in the RNAi pathway.
Current opinion in structural biology, Issue 1, Vol. 15, 107-15
DOI: 10.1016/j.sbi.2005.01.010, PubMed: 15718141

Edlich C, Stier G, Simon B, Sattler M, Muhle-Goll C (2005)
Structure and phosphatidylinositol-(3,4)-bisphosphate binding of the C-terminal PH domain of human pleckstrin.
Structure (London, England : 1993), Issue 2, Vol. 13, 277-86
DOI: 10.1016/j.str.2004.11.012, PubMed: 15698571

Narayanan S, Reif B (2005)
Characterization of chemical exchange between soluble and aggregated states of beta-amyloid by solution-state NMR upon variation of salt conditions.
Biochemistry, Issue 5, Vol. 44, 1444-52
DOI: 10.1021/bi048264b, PubMed: 15683229

Wang Y, Tetko IV, Hall MA, Frank E, Facius A, Mayer KF, Mewes HW (2005)
Gene selection from microarray data for cancer classification--a machine learning approach.
Computational biology and chemistry, Issue 1, Vol. 29, 37-46
DOI: 10.1016/j.compbiolchem.2004.11.001, PubMed: 15680584

Bottomley MJ, Stier G, Pennacchini D, Legube G, Simon B, Akhtar A, Sattler M, Musco G (2005)
NMR structure of the first PHD finger of autoimmune regulator protein (AIRE1). Insights into autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy (APECED) disease.
The Journal of biological chemistry, Issue 12, Vol. 280, 11505-12
DOI: 10.1074/jbc.M413959200, PubMed: 15649886

Sattler MA, Mtasiwa D, Kiama M, Premji Z, Tanner M, Killeen GF, Lengeler C (2005)
Habitat characterization and spatial distribution of Anopheles sp. mosquito larvae in Dar es Salaam (Tanzania) during an extended dry period.
Malaria journal, Vol. 4, 4
DOI: 10.1186/1475-2875-4-4, PubMed: 15649333

Siwanowicz I, Popowicz GM, Wisniewska M, Huber R, Kuenkele KP, Lang K, Engh RA, Holak TA (2005)
Structural basis for the regulation of insulin-like growth factors by IGF binding proteins.
Structure (London, England : 1993), Issue 1, Vol. 13, 155-67
DOI: 10.1016/j.str.2004.11.009, PubMed: 15642270

Chevelkov V, Chen Z, Bermel W, Reif B (2005)
Resolution enhancement in MAS solid-state NMR by application of 13C homonuclear scalar decoupling during acquisition.
Journal of magnetic resonance (San Diego, Calif. : 1997), Issue 1, Vol. 172, 56-62
DOI: 10.1016/j.jmr.2004.09.017, PubMed: 15589408

Friedel CC, Jahn KH, Sommer S, Rudd S, Mewes HW, Tetko IV (2005)
Support vector machines for separation of mixed plant-pathogen EST collections based on codon usage.
Bioinformatics (Oxford, England), Issue 8, Vol. 21, 1383-8
DOI: 10.1093/bioinformatics/bti200, PubMed: 15585526

Civera C, Simon B, Stier G, Sattler M, Macias MJ (2005)
Structure and dynamics of the human pleckstrin DEP domain: distinct molecular features of a novel DEP domain subfamily.
Proteins, Issue 2, Vol. 58, 354-66
DOI: 10.1002/prot.20320, PubMed: 15573383

Niessing D, Hüttelmaier S, Zenklusen D, Singer RH, Burley SK (2004)
She2p is a novel RNA binding protein with a basic helical hairpin motif.
Cell, Issue 4, Vol. 119, 491-502
DOI: 10.1016/j.cell.2004.10.018, PubMed: 15537539

Tetko IV, Bruneau P (2004)
Application of ALOGPS to predict 1-octanol/water distribution coefficients, logP, and logD, of AstraZeneca in-house database.
Journal of pharmaceutical sciences, Issue 12, Vol. 93, 3103-10
DOI: 10.1002/jps.20217, PubMed: 15514985

Tetko IV, Poda GI (2004)
Application of ALOGPS 2.1 to predict log D distribution coefficient for Pfizer proprietary compounds.
Journal of medicinal chemistry, Issue 23, Vol. 47, 5601-4
DOI: 10.1021/jm049509l, PubMed: 15509156

Ruepp A, Zollner A, Maier D, Albermann K, Hani J, Mokrejs M, Tetko I, Güldener U, Mannhaupt G, Münsterkötter M, Mewes HW (2004)
The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes.
Nucleic acids research, Issue 18, Vol. 32, 5539-45
DOI: 10.1093/nar/gkh894, PubMed: 15486203

Schleifenbaum A, Stier G, Gasch A, Sattler M, Schultz C (2004)
Genetically encoded FRET probe for PKC activity based on pleckstrin.
Journal of the American Chemical Society, Issue 38, Vol. 126, 11786-7
DOI: 10.1021/ja0460155, PubMed: 15382901

Markwick PR, Sattler M (2004)
Site-specific variations of carbonyl chemical shift anisotropies in proteins.
Journal of the American Chemical Society, Issue 37, Vol. 126, 11424-5
DOI: 10.1021/ja047859r, PubMed: 15366873

Popowicz GM, Müller R, Noegel AA, Schleicher M, Huber R, Holak TA (2004)
Molecular structure of the rod domain of dictyostelium filamin.
Journal of molecular biology, Issue 5, Vol. 342, 1637-46
DOI: 10.1016/j.jmb.2004.08.017, PubMed: 15364587

Rauch J, Ahlemann M, Schaffrik M, Mack B, Ertongur S, Andratschke M, Zeidler R, Lang S, Gires O (2004)
Allogenic antibody-mediated identification of head and neck cancer antigens.
Biochemical and biophysical research communications, Issue 1, Vol. 323, 156-62
DOI: 10.1016/j.bbrc.2004.08.071, PubMed: 15351715

Chen Z, Reif B (2004)
Measurements of residual dipolar couplings in peptide inhibitors weakly aligned by transient binding to peptide amyloid fibrils.
Journal of biomolecular NMR, Issue 4, Vol. 29, 525-30
DOI: 10.1023/B:JNMR.0000034353.98902.4f, PubMed: 15243183

Peng C, Unger SW, Filipp FV, Sattler M, Szalma S (2004)
Automated evaluation of chemical shift perturbation spectra: New approaches to quantitative analysis of receptor-ligand interaction NMR spectra.
Journal of biomolecular NMR, Issue 4, Vol. 29, 491-504
DOI: 10.1023/B:JNMR.0000034351.37982.9e, PubMed: 15243180

Antonov AV, Tetko IV, Prokopenko VV, Kosykh D, Mewes HW (2004)
A web portal for classification of expression data using maximal margin linear programming.
Bioinformatics (Oxford, England), Issue 17, Vol. 20, 3284-5
DOI: 10.1093/bioinformatics/bth376, PubMed: 15217811

Lingel A, Simon B, Izaurralde E, Sattler M (2004)
NMR assignment of the Drosophila Argonaute2 PAZ domain.
Journal of biomolecular NMR, Issue 3, Vol. 29, 421-2
DOI: 10.1023/B:JNMR.0000032513.15693.04, PubMed: 15213449

Münz M, Kieu C, Mack B, Schmitt B, Zeidler R, Gires O (2004)
The carcinoma-associated antigen EpCAM upregulates c-myc and induces cell proliferation.
Oncogene, Issue 34, Vol. 23, 5748-58
DOI: 10.1038/sj.onc.1207610, PubMed: 15195135

Walz A, Mack B, Schmitt B, Gires O, Wollenberg B, Zeidler R (2004)
Antitumour effects of a bispecific trivalent antibody in multicellular tumour spheroids.
Anticancer research, Issue 2B, Vol. 24, 887-93
PubMed: 15161042

Lingel A, Simon B, Izaurralde E, Sattler M (2004)
Nucleic acid 3'-end recognition by the Argonaute2 PAZ domain.
Nature structural & molecular biology, Issue 6, Vol. 11, 576-7
DOI: 10.1038/nsmb777, PubMed: 15156196

Messias AC, Sattler M (2004)
Structural basis of single-stranded RNA recognition.
Accounts of chemical research, Issue 5, Vol. 37, 279-87
DOI: 10.1021/ar030034m, PubMed: 15147168

Ventura S, Zurdo J, Narayanan S, Parreño M, Mangues R, Reif B, Chiti F, Giannoni E, Dobson CM, Aviles FX, Serrano L (2004)
Short amino acid stretches can mediate amyloid formation in globular proteins: the Src homology 3 (SH3) case.
Proceedings of the National Academy of Sciences of the United States of America, Issue 19, Vol. 101, 7258-63
DOI: 10.1073/pnas.0308249101, PubMed: 15123800

Schlee M, Krug T, Gires O, Zeidler R, Hammerschmidt W, Mailhammer R, Laux G, Sauer G, Lovric J, Bornkamm GW (2004)
Identification of Epstein-Barr virus (EBV) nuclear antigen 2 (EBNA2) target proteins by proteome analysis: activation of EBNA2 in conditionally immortalized B cells reflects early events after infection of primary B cells by EBV.
Journal of virology, Issue 8, Vol. 78, 3941-52
DOI: 10.1128/jvi.78.8.3941-3952.2004, PubMed: 15047810

Antonov AV, Tetko IV, Mader MT, Budczies J, Mewes HW (2004)
Optimization models for cancer classification: extracting gene interaction information from microarray expression data.
Bioinformatics (Oxford, England), Issue 5, Vol. 20, 644-52
DOI: 10.1093/bioinformatics/btg462, PubMed: 15033871

Mavoungou C, Israel L, Rehm T, Ksiazek D, Krajewski M, Popowicz G, Noegel AA, Schleicher M, Holak TA (2004)
NMR structural characterization of the N-terminal domain of the adenylyl cyclase-associated protein (CAP) from Dictyostelium discoideum.
Journal of biomolecular NMR, Issue 1, Vol. 29, 73-84
DOI: 10.1023/B:JNMR.0000019513.86120.98, PubMed: 15017141

Andersson A, Almqvist J, Hagn F, Mäler L (2004)
Diffusion and dynamics of penetratin in different membrane mimicking media.
Biochimica et biophysica acta, Issue 1, Vol. 1661, 18-25
DOI: 10.1016/j.bbamem.2003.11.014, PubMed: 14967471

Simon B, Sattler M (2004)
Speeding up biomolecular NMR spectroscopy.
Angewandte Chemie (International ed. in English), Issue 7, Vol. 43, 782-6
DOI: 10.1002/anie.200301680, PubMed: 14767949

Dubin G, Popowicz G, Krajewski M, Potempa J, Dubin A, Holak TA (2004)
1H, 15N and 13C NMR resonance assignments of staphostatin A, a specific Staphylococcus aureus cysteine proteinase inhibitor.
Journal of biomolecular NMR, Issue 3, Vol. 28, 295-6
DOI: 10.1023/B:JNMR.0000013681.37659.24, PubMed: 14752262

Amininasab M, Elmi MM, Endlich N, Endlich K, Parekh N, Naderi-Manesh H, Schaller J, Mostafavi H, Sattler M, Sarbolouki MN, Muhle-Goll C (2004)
Functional and structural characterization of a novel member of the natriuretic family of peptides from the venom of Pseudocerastes persicus.
FEBS letters, Issue 1-3, Vol. 557, 104-8
DOI: 10.1016/s0014-5793(03)01455-8, PubMed: 14741349

Dubin G, Krajewski M, Popowicz G, Stec-Niemczyk J, Bochtler M, Potempa J, Dubin A, Holak TA (2003)
A novel class of cysteine protease inhibitors: solution structure of staphostatin A from Staphylococcus aureus.
Biochemistry, Issue 46, Vol. 42, 13449-56
DOI: 10.1021/bi035310j, PubMed: 14621990

Lingel A, Simon B, Izaurralde E, Sattler M (2003)
Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain.
Nature, Issue 6965, Vol. 426, 465-9
DOI: 10.1038/nature02123, PubMed: 14615801

Tetko IV (2003)
The WWW as a tool to obtain molecular parameters.
Mini reviews in medicinal chemistry, Issue 8, Vol. 3, 809-20
DOI: 10.2174/1389557033487638, PubMed: 14529500

Gires O, Eskofier S, Lang S, Zeidler R, Münz M (2003)
Cloning and characterisation of a 1.1 kb fragment of the carcinoma-associated epithelial cell adhesion molecule promoter.
Anticancer research, Issue 4, Vol. 23, 3255-61
PubMed: 12926061

Narayanan S, Bösl B, Walter S, Reif B (2003)
Importance of low-oligomeric-weight species for prion propagation in the yeast prion system Sup35/Hsp104.
Proceedings of the National Academy of Sciences of the United States of America, Issue 16, Vol. 100, 9286-91
DOI: 10.1073/pnas.1233535100, PubMed: 12876196

Leung T, Bischof J, Söll I, Niessing D, Zhang D, Ma J, Jäckle H, Driever W (2003)
bozozok directly represses bmp2b transcription and mediates the earliest dorsoventral asymmetry of bmp2b expression in zebrafish.
Development (Cambridge, England), Issue 16, Vol. 130, 3639-49
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Chevelkov V, van Rossum BJ, Castellani F, Rehbein K, Diehl A, Hohwy M, Steuernagel S, Engelke F, Oschkinat H, Reif B (2003)
1H detection in MAS solid-state NMR spectroscopy of biomacromolecules employing pulsed field gradients for residual solvent suppression.
Journal of the American Chemical Society, Issue 26, Vol. 125, 7788-9
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Aksenova TI, Chibirova OK, Dryga OA, Tetko IV, Benabid AL, Villa AE (2003)
An unsupervised automatic method for sorting neuronal spike waveforms in awake and freely moving animals.
Methods (San Diego, Calif.), Issue 2, Vol. 30, 178-87
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Selenko P, Gregorovic G, Sprangers R, Stier G, Rhani Z, Krämer A, Sattler M (2003)
Structural basis for the molecular recognition between human splicing factors U2AF65 and SF1/mBBP.
Molecular cell, Issue 4, Vol. 11, 965-76
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Surdo PL, Bottomley MJ, Sattler M, Scheffzek K (2003)
Crystal structure and nuclear magnetic resonance analyses of the SAND domain from glucocorticoid modulatory element binding protein-1 reveals deoxyribonucleic acid and zinc binding regions.
Molecular endocrinology (Baltimore, Md.), Issue 7, Vol. 17, 1283-95
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Pauli C, Münz M, Kieu C, Mack B, Breinl P, Wollenberg B, Lang S, Zeidler R, Gires O (2003)
Tumor-specific glycosylation of the carcinoma-associated epithelial cell adhesion molecule EpCAM in head and neck carcinomas.
Cancer letters, Issue 1, Vol. 193, 25-32
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Efficient Partition of Learning Data Sets for Neural Network Training.
Neural networks : the official journal of the International Neural Network Society, Issue 8, Vol. 10, 1361-1374
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1H, 13C and 15N backbone resonance assignments of the SAND domains from glucocorticoid modulatory element binding proteins-1 and -2.
Journal of biomolecular NMR, Issue 3, Vol. 25, 259-60
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Sprangers R, Groves MR, Sinning I, Sattler M (2003)
High-resolution X-ray and NMR structures of the SMN Tudor domain: conformational variation in the binding site for symmetrically dimethylated arginine residues.
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Selenko P, Sattler M (2003)
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Reif B, Van Rossum BJ, Castellani F, Rehbein K, Diehl A, Oschkinat H (2003)
Characterization of (1)H-(1)H distances in a uniformly (2)H,(15)N-labeled SH3 domain by MAS solid-state NMR spectroscopy (section sign).
Journal of the American Chemical Society, Issue 6, Vol. 125, 1488-9
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Sprangers R, Selenko P, Sattler M, Sinning I, Groves MR (2003)
Definition of domain boundaries and crystallization of the SMN Tudor domain.
Acta crystallographica. Section D, Biological crystallography, Issue Pt 2, Vol. 59, 366-8
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Markwick PR, Sprangers R, Sattler M (2003)
Dynamic effects on j-couplings across hydrogen bonds in proteins.
Journal of the American Chemical Society, Issue 3, Vol. 125, 644-5
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De novo structure determination from residual dipolar couplings by NMR spectroscopy.
Angewandte Chemie (International ed. in English), Issue 3, Vol. 41, 437-40
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Lang S, Lauffer L, Clausen C, Löhr I, Schmitt B, Hölzel D, Wollenberg B, Gires O, Kastenbauer E, Zeidler R (2003)
Impaired monocyte function in cancer patients: restoration with a cyclooxygenase-2 inhibitor.
FASEB journal : official publication of the Federation of American Societies for Experimental Biology, Issue 2, Vol. 17, 286-8
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Wiesner S, Stier G, Sattler M, Macias MJ (2002)
Solution structure and ligand recognition of the WW domain pair of the yeast splicing factor Prp40.
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Douangamath A, Filipp FV, Klein AT, Barnett P, Zou P, Voorn-Brouwer T, Vega MC, Mayans OM, Sattler M, Distel B, Wilmanns M (2002)
Topography for independent binding of alpha-helical and PPII-helical ligands to a peroxisomal SH3 domain.
Molecular cell, Issue 5, Vol. 10, 1007-17
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Tetko IV, Tanchuk VY (2002)
Application of associative neural networks for prediction of lipophilicity in ALOGPS 2.1 program.
Journal of chemical information and computer sciences, Issue 5, Vol. 42, 1136-45
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Niessing D, Blanke S, Jäckle H (2002)
Bicoid associates with the 5'-cap-bound complex of caudal mRNA and represses translation.
Genes & development, Issue 19, Vol. 16, 2576-82
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Rienstra CM, Hohwy M, Mueller LJ, Jaroniec CP, Reif B, Griffin RG (2002)
Determination of multiple torsion-angle constraints in U-(13)C,(15)N-labeled peptides: 3D (1)H-(15)N-(13)C-(1)H dipolar chemical shift NMR spectroscopy in rotating solids.
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Kellenberger E, Stier G, Sattler M (2002)
Induced folding of the U2AF35 RRM upon binding to U2AF65.
FEBS letters, Issue 1-3, Vol. 528, 171-6
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Moosmann A, Khan N, Cobbold M, Zentz C, Delecluse HJ, Hollweck G, Hislop AD, Blake NW, Croom-Carter D, Wollenberg B, Moss PA, Zeidler R, Rickinson AB, Hammerschmidt W (2002)
B cells immortalized by a mini-Epstein-Barr virus encoding a foreign antigen efficiently reactivate specific cytotoxic T cells.
Blood, Issue 5, Vol. 100, 1755-64
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Rienstra CM, Tucker-Kellogg L, Jaroniec CP, Hohwy M, Reif B, McMahon MT, Tidor B, Lozano-Pérez T, Griffin RG (2002)
De novo determination of peptide structure with solid-state magic-angle spinning NMR spectroscopy.
Proceedings of the National Academy of Sciences of the United States of America, Issue 16, Vol. 99, 10260-5
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Tetko IV (2002)
Neural network studies. 4. Introduction to associative neural networks.
Journal of chemical information and computer sciences, Issue 3, Vol. 42, 717-28
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Zanier K, Luyten I, Crombie C, Muller B, Schümperli D, Linge JP, Nilges M, Sattler M (2002)
Structure of the histone mRNA hairpin required for cell cycle regulation of histone gene expression.
RNA (New York, N.Y.), Issue 1, Vol. 8, 29-46
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