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Discovery of Inhibitory Fragments That Selectively Target Spire2-FMN2 Interaction.
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Biomedicines, Issue 11, Vol. 11
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Integrated chemical and genetic screens unveil FSP1 mechanisms of ferroptosis regulation.
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Performance of the cross-polarization experiment in conditions of radiofrequency field inhomogeneity and slow to ultrafast magic angle spinning (MAS).
Magnetic resonance (Gottingen, Germany), Issue 2, Vol. 4, 199-215
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Binding mechanism and biological effects of flavone DYRK1A inhibitors for the design of new antidiabetics.
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Assembly-dependent Structure Formation Shapes Human Interleukin-23 versus Interleukin-12 Secretion.
Journal of molecular biology, Issue 23, Vol. 435, 168300
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Therapeutic Potential of Targeting Prokineticin Receptors in Diseases.
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When catchers meet - a computational study on the dimerization of the Buckycatcher.
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Mechanistic insights into the aggregation pathway of the patient-derived immunoglobulin light chain variable domain protein FOR005.
Nature communications, Issue 1, Vol. 14, 3755
DOI: 10.1038/s41467-023-39280-0, PubMed: 37353525 |
Calonaci N, Bernetti M, Jones A, Sattler M, Bussi G (2023)
Molecular Dynamics Simulations with Grand-Canonical Reweighting Suggest Cooperativity Effects in RNA Structure Probing Experiments.
Journal of chemical theory and computation, Issue 12, Vol. 19, 3672-3685
DOI: 10.1021/acs.jctc.3c00084, PubMed: 37288967 |
Günsel U, Klöpfer K, Häusler E, Hitzenberger M, Bölter B, Sperl LE, Zacharias M, Soll J, Hagn F (2023)
Structural basis of metabolite transport by the chloroplast outer envelope channel OEP21.
Nature structural & molecular biology, Issue 6, Vol. 30, 761-769
DOI: 10.1038/s41594-023-00984-y, PubMed: 37156968 |
Mohamadi M, Goricanec D, Wagner G, Hagn F (2023)
NMR sample optimization and backbone assignment of a stabilized neurotensin receptor.
Journal of structural biology, Issue 2, Vol. 215, 107970
DOI: 10.1016/j.jsb.2023.107970, PubMed: 37142193 |
Svilenov HL, Delhommel F, Siebenmorgen T, Rührnößl F, Popowicz GM, Reiter A, Sattler M, Brockmeyer C, Buchner J (2023)
Extrinsic stabilization of antiviral ACE2-Fc fusion proteins targeting SARS-CoV-2.
Communications biology, Issue 1, Vol. 6, 386
DOI: 10.1038/s42003-023-04762-w, PubMed: 37031320 |
Menezes F, Popowicz GM (2023)
A Buckycatcher in Solution-A Computational Perspective.
Molecules (Basel, Switzerland), Issue 6, Vol. 28
DOI: 10.3390/molecules28062841, PubMed: 36985812 |
Agam G, Gebhardt C, Popara M, Mächtel R, Folz J, Ambrose B, Chamachi N, Chung SY, Craggs TD, de Boer M, Grohmann D, Ha T, Hartmann A, Hendrix J, Hirschfeld V, Hübner CG, Hugel T, Kammerer D, Kang HS, Kapanidis AN, Krainer G, Kramm K, Lemke EA, Lerner E, Margeat E, Martens K, Michaelis J, Mitra J, Moya Muñoz GG, Quast RB, Robb NC, Sattler M, Schlierf M, Schneider J, Schröder T, Sefer A, Tan PS, Thurn J, Tinnefeld P, van Noort J, Weiss S, Wendler N, Zijlstra N, Barth A, Seidel CAM, Lamb DC, Cordes T (2023)
Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins.
Nature methods, Issue 4, Vol. 20, 523-535
DOI: 10.1038/s41592-023-01807-0, PubMed: 36973549 |
Escher BI, Altenburger R, Blüher M, Colbourne JK, Ebinghaus R, Fantke P, Hein M, Köck W, Kümmerer K, Leipold S, Li X, Scheringer M, Scholz S, Schloter M, Schweizer PJ, Tal T, Tetko I, Traidl-Hoffmann C, Wick LY, Fenner K (2023)
Modernizing persistence-bioaccumulation-toxicity (PBT) assessment with high throughput animal-free methods.
Archives of toxicology, Issue 5, Vol. 97, 1267-1283
DOI: 10.1007/s00204-023-03485-5, PubMed: 36952002 |
Grygier P, Pustelny K, Nowak J, Golik P, Popowicz GM, Plettenburg O, Dubin G, Menezes F, Czarna A (2023)
Silmitasertib (CX-4945), a Clinically Used CK2-Kinase Inhibitor with Additional Effects on GSK3β and DYRK1A Kinases: A Structural Perspective.
Journal of medicinal chemistry, Issue 6, Vol. 66, 4009-4024
DOI: 10.1021/acs.jmedchem.2c01887, PubMed: 36883902 |
Weller M, Sattler M, Rant U (2023)
Development of an aptamer-based screening for identification and characterization of novel RNA therapeutics using switchSENSE® technology.
Biophysical journal, Issue 3S1, Vol. 122, 357a
DOI: 10.1016/j.bpj.2022.11.1974, PubMed: 36783808 |
Roca-Martínez J, Dhondge H, Sattler M, Vranken WF (2023)
Deciphering the RRM-RNA recognition code: A computational analysis.
PLoS computational biology, Issue 1, Vol. 19, e1010859
DOI: 10.1371/journal.pcbi.1010859, PubMed: 36689472 |
Gui X, Feng S, Li Z, Li Y, Reif B, Shi B, Niu Z (2023)
Liquid-liquid phase separation of amyloid-β oligomers modulates amyloid fibrils formation.
The Journal of biological chemistry, Issue 3, Vol. 299, 102926
DOI: 10.1016/j.jbc.2023.102926, PubMed: 36682493 |
Zanuttigh E, Derderian K, Güra MA, Geerlof A, Di Meo I, Cavestro C, Hempfling S, Ortiz-Collazos S, Mauthe M, Kmieć T, Cammarota E, Panzeri MC, Klopstock T, Sattler M, Winkelmann J, Messias AC, Iuso A (2023)
Identification of Autophagy as a Functional Target Suitable for the Pharmacological Treatment of Mitochondrial Membrane Protein-Associated Neurodegeneration (MPAN) In Vitro.
Pharmaceutics, Issue 1, Vol. 15
DOI: 10.3390/pharmaceutics15010267, PubMed: 36678896 |
Molitor L, Klostermann M, Bacher S, Merl-Pham J, Spranger N, Burczyk S, Ketteler C, Rusha E, Tews D, Pertek A, Proske M, Busch A, Reschke S, Feederle R, Hauck SM, Blum H, Drukker M, Fischer-Posovszky P, König J, Zarnack K, Niessing D (2023)
Depletion of the RNA-binding protein PURA triggers changes in posttranscriptional gene regulation and loss of P-bodies.
Nucleic acids research, Issue 3, Vol. 51, 1297-1316
DOI: 10.1093/nar/gkac1237, PubMed: 36651277 |
Delhommel F, Martínez-Lumbreras S, Sattler M (2023)
Combining NMR, SAXS and SANS to characterize the structure and dynamics of protein complexes.
Methods in enzymology, Vol. 678, 263-297
DOI: 10.1016/bs.mie.2022.09.020, PubMed: 36641211 |
Keil P, Wulf A, Kachariya N, Reuscher S, Hühn K, Silbern I, Altmüller J, Keller M, Stehle R, Zarnack K, Sattler M, Urlaub H, Sträßer K (2023)
Npl3 functions in mRNP assembly by recruitment of mRNP components to the transcription site and their transfer onto the mRNA.
Nucleic acids research, Issue 2, Vol. 51, 831-851
DOI: 10.1093/nar/gkac1206, PubMed: 36583366 |
Chora AF, Pedroso D, Kyriakou E, Pejanovic N, Colaço H, Gozzelino R, Barros A, Willmann K, Velho T, Moita CF, Santos I, Pereira P, Carvalho S, Martins FB, Ferreira JA, de Almeida SF, Benes V, Anrather J, Weis S, Soares MP, Geerlof A, Neefjes J, Sattler M, Messias AC, Neves-Costa A, Moita LF (2022)
DNA damage independent inhibition of NF-κB transcription by anthracyclines.
eLife, Vol. 11
DOI: 10.7554/eLife.77443, PubMed: 36476511 |
Gopalswamy M, Zheng C, Gaussmann S, Kooshapur H, Hambruch E, Schliebs W, Erdmann R, Antes I, Sattler M (2023)
Distinct conformational and energetic features define the specific recognition of (di)aromatic peptide motifs by PEX14.
Biological chemistry, Issue 2-3, Vol. 404, 179-194
DOI: 10.1515/hsz-2022-0177, PubMed: 36437542 |
Roessler J, Pich D, Albanese M, Wratil PR, Krähling V, Hellmuth JC, Scherer C, von Bergwelt-Baildon M, Becker S, Keppler OT, Brisson A, Zeidler R, Hammerschmidt W (2022)
Quantitation of SARS-CoV-2 neutralizing antibodies with a virus-free, authentic test.
PNAS nexus, Issue 2, Vol. 1
DOI: 10.1093/pnasnexus/pgac045, PubMed: 36382127 |
Daniilidis M, Brandl MJ, Hagn F (2022)
The Advanced Properties of Circularized MSP Nanodiscs Facilitate High-resolution NMR Studies of Membrane Proteins.
Journal of molecular biology, Issue 24, Vol. 434, 167861
DOI: 10.1016/j.jmb.2022.167861, PubMed: 36273602 |
Narayanan D, Tran KT, Pallesen JS, Solbak SMØ, Qin Y, Mukminova E, Luchini M, Vasilyeva KO, González Chichón D, Goutsiou G, Poulsen C, Haapanen N, Popowicz GM, Sattler M, Olagnier D, Gajhede M, Bach A (2022)
Development of Noncovalent Small-Molecule Keap1-Nrf2 Inhibitors by Fragment-Based Drug Discovery.
Journal of medicinal chemistry, Issue 21, Vol. 65, 14481-14526
DOI: 10.1021/acs.jmedchem.2c00830, PubMed: 36263945 |
Napolitano V, Mróz P, Marciniak M, Kalel VC, Softley CA, Janna Olmos JD, Tippler BG, Schorpp K, Rioton S, Fröhlich T, Plettenburg O, Hadian K, Erdmann R, Sattler M, Popowicz GM, Dawidowski M, Dubin G (2022)
Structure-based design, synthesis and evaluation of a novel family of PEX5-PEX14 interaction inhibitors against Trypanosoma.
European journal of medicinal chemistry, Vol. 243, 114778
DOI: 10.1016/j.ejmech.2022.114778, PubMed: 36194937 |
Xue K, Sarkar R, Tošner Z, Reif B (2022)
Field and magic angle spinning frequency dependence of proton resonances in rotating solids.
Progress in nuclear magnetic resonance spectroscopy, Vol. 130-131, 47-61
DOI: 10.1016/j.pnmrs.2022.04.001, PubMed: 36113917 |
Blahut J, Brandl MJ, Pradhan T, Reif B, Tošner Z (2022)
Sensitivity-Enhanced Multidimensional Solid-State NMR Spectroscopy by Optimal-Control-Based Transverse Mixing Sequences.
Journal of the American Chemical Society, Issue 38, Vol. 144, 17336-17340
DOI: 10.1021/jacs.2c06568, PubMed: 36074981 |
Kitel R, Rodríguez I, Del Corte X, Atmaj J, Żarnik M, Surmiak E, Muszak D, Magiera-Mularz K, Popowicz GM, Holak TA, Musielak B (2022)
Exploring the Surface of the Ectodomain of the PD-L1 Immune Checkpoint with Small-Molecule Fragments.
ACS chemical biology, Issue 9, Vol. 17, 2655-2663
DOI: 10.1021/acschembio.2c00583, PubMed: 36073782 |
Napolitano V, Softley CA, Blat A, Kalel VC, Schorpp K, Siebenmorgen T, Hadian K, Erdmann R, Sattler M, Popowicz GM, Dubin G (2022)
Small molecule mediated inhibition of protein cargo recognition by peroxisomal transport receptor PEX5 is toxic to Trypanosoma.
Scientific reports, Issue 1, Vol. 12, 14705
DOI: 10.1038/s41598-022-18841-1, PubMed: 36038611 |
Kreft L, Schepers A, Hils M, Swiontek K, Flatley A, Janowski R, Mirzaei MK, Dittmar M, Chakrapani N, Desai MS, Eyerich S, Deng L, Niessing D, Fischer K, Feederle R, Blank S, Schmidt-Weber CB, Hilger C, Biedermann T, Ohnmacht C (2022)
A novel monoclonal IgG1 antibody specific for Galactose-alpha-1,3-galactose questions alpha-Gal epitope expression by bacteria.
Frontiers in immunology, Vol. 13, 958952
DOI: 10.3389/fimmu.2022.958952, PubMed: 35990627 |
Tetko IV, Klambauer G, Clevert DA, Shah I, Benfenati E (2022)
Artificial Intelligence Meets Toxicology.
Chemical research in toxicology, Issue 8, Vol. 35, 1289-1290
DOI: 10.1021/acs.chemrestox.2c00196, PubMed: 35965447 |
Menezes F, Popowicz GM (2022)
ULYSSES: An Efficient and Easy to Use Semiempirical Library for C+.
Journal of chemical information and modeling, Issue 16, Vol. 62, 3685-3694
DOI: 10.1021/acs.jcim.2c00757, PubMed: 35930308 |
Sundaria A, Liberta F, Savran D, Sarkar R, Rodina N, Peters C, Schwierz N, Haupt C, Schmidt M, Reif B (2022)
SAA fibrils involved in AA amyloidosis are similar in bulk and by single particle reconstitution: A MAS solid-state NMR study.
Journal of structural biology: X, Vol. 6, 100069
DOI: 10.1016/j.yjsbx.2022.100069, PubMed: 35924280 |
Jones AN, Graß C, Meininger I, Geerlof A, Klostermann M, Zarnack K, Krappmann D, Sattler M (2022)
Modulation of pre-mRNA structure by hnRNP proteins regulates alternative splicing of MALT1.
Science advances, Issue 31, Vol. 8, eabp9153
DOI: 10.1126/sciadv.abp9153, PubMed: 35921415 |
Hiepp L, Mayr D, Gärtner K, Schmoeckel E, Klauschen F, Burges A, Mahner S, Zeidler R, Czogalla B (2022)
Carbonic anhydrase XII as biomarker and therapeutic target in ovarian carcinomas.
PloS one, Issue 7, Vol. 17, e0271630
DOI: 10.1371/journal.pone.0271630, PubMed: 35901081 |
Menezes F, Popowicz GM (2022)
Acid Rain and Flue Gas: Quantum Chemical Hydrolysis of NO2.
Chemphyschem : a European journal of chemical physics and physical chemistry, Issue 21, Vol. 23, e202200395
DOI: 10.1002/cphc.202200395, PubMed: 35875889 |
Nguyen A, Gemmecker G, Softley CA, Movsisyan LD, Pfaffeneder T, Heine A, Reuter K, Diederich F, Sattler M, Klebe G (2022)
19F-NMR Unveils the Ligand-Induced Conformation of a Catalytically Inactive Twisted Homodimer of tRNA-Guanine Transglycosylase.
ACS chemical biology, Issue 7, Vol. 17, 1745-1755
DOI: 10.1021/acschembio.2c00080, PubMed: 35763700 |
Jones AN, Walbrun A, Falleroni F, Rief M, Sattler M (2022)
Conformational Effects of a Cancer-Linked Mutation in Pri-miR-30c RNA.
Journal of molecular biology, Issue 18, Vol. 434, 167705
DOI: 10.1016/j.jmb.2022.167705, PubMed: 35760371 |
Mohid SA, Biswas K, Won T, Mallela LS, Gucchait A, Butzke L, Sarkar R, Barkham T, Reif B, Leipold E, Roy S, Misra AK, Lakshminarayanan R, Lee D, Bhunia A (2022)
Structural insights into the interaction of antifungal peptides and ergosterol containing fungal membrane.
Biochimica et biophysica acta. Biomembranes, Issue 10, Vol. 1864, 183996
DOI: 10.1016/j.bbamem.2022.183996, PubMed: 35753394 |
Menezes F, Popowicz GM (2022)
How to Catch the Ball: Fullerene Binding to the Corannulene Pincer.
Molecules (Basel, Switzerland), Issue 12, Vol. 27
DOI: 10.3390/molecules27123838, PubMed: 35744963 |
Opdensteinen P, Sperl LE, Mohamadi M, Kündgen-Redding N, Hagn F, Buyel JF (2022)
The transient expression of recombinant proteins in plant cell packs facilitates stable isotope labelling for NMR spectroscopy.
Plant biotechnology journal, Issue 10, Vol. 20, 1928-1939
DOI: 10.1111/pbi.13873, PubMed: 35702941 |
Jones AN, Mourão A, Czarna A, Matsuda A, Fino R, Pyrc K, Sattler M, Popowicz GM (2022)
Characterization of SARS-CoV-2 replication complex elongation and proofreading activity.
Scientific reports, Issue 1, Vol. 12, 9593
DOI: 10.1038/s41598-022-13380-1, PubMed: 35688849 |
Jussupow A, Lopez A, Baumgart M, Mader SL, Sattler M, Kaila VRI (2022)
Extended conformational states dominate the Hsp90 chaperone dynamics.
The Journal of biological chemistry, Issue 7, Vol. 298, 102101
DOI: 10.1016/j.jbc.2022.102101, PubMed: 35667441 |
Czarna A, Plewka J, Kresik L, Matsuda A, Karim A, Robinson C, O'Byrne S, Cunningham F, Georgiou I, Wilk P, Pachota M, Popowicz G, Wyatt PG, Dubin G, Pyrć K (2022)
Refolding of lid subdomain of SARS-CoV-2 nsp14 upon nsp10 interaction releases exonuclease activity.
Structure (London, England : 1993), Issue 8, Vol. 30, 1050-1054.e2
DOI: 10.1016/j.str.2022.04.014, PubMed: 35609600 |
Spreitzer E, Alderson TR, Bourgeois B, Eggenreich L, Habacher H, Brahmersdorfer G, Pritišanac I, Sánchez-Murcia PA, Madl T (2022)
FOXO transcription factors differ in their dynamics and intra/intermolecular interactions.
Current research in structural biology, Vol. 4, 118-133
DOI: 10.1016/j.crstbi.2022.04.001, PubMed: 35573459 |
Karlov DS, Sosnin S, Tetko IV, Fedorov MV (2019)
Chemical space exploration guided by deep neural networks.
RSC advances, Issue 9, Vol. 9, 5151-5157
DOI: 10.1039/c8ra10182e, PubMed: 35514634 |
Popowicz GM, Pyrc K, Hadian K (2022)
Vaccination versus SARS-CoV-2 Omicron: three vaccine doses win the battle.
Signal transduction and targeted therapy, Issue 1, Vol. 7, 140
DOI: 10.1038/s41392-022-01000-3, PubMed: 35477929 |
Kellner M, von Neubeck B, Czogalla B, Feederle R, Vick B, Jeremias I, Zeidler R (2022)
A Novel Anti-CD73 Antibody That Selectively Inhibits Membrane CD73 Shows Antitumor Activity and Induces Tumor Immune Escape.
Biomedicines, Issue 4, Vol. 10
DOI: 10.3390/biomedicines10040825, PubMed: 35453575 |
Metelytsia LO, Hodyna DM, Semenyuta IV, Kovalishyn VV, Rogalsky SP, Derevianko KY, Brovarets VS, Tetko IV (2022)
Theoretical and Experimental Studies of Phosphonium Ionic Liquids as Potential Antibacterials of MDR Acinetobacter baumannii.
Antibiotics (Basel, Switzerland), Issue 4, Vol. 11
DOI: 10.3390/antibiotics11040491, PubMed: 35453241 |
Jessberger N, Diedrich R, Janowski R, Niessing D, Märtlbauer E (2022)
Presence and function of Hbl B', the fourth protein component encoded by the hbl operon in Bacillus cereus.
Virulence, Issue 1, Vol. 13, 483-501
DOI: 10.1080/21505594.2022.2046951, PubMed: 35291913 |
Kogan PS, Wirth F, Tomar A, Darr J, Teperino R, Lahm H, Dreßen M, Puluca N, Zhang Z, Neb I, Beck N, Luzius T, de la Osa de la Rosa L, Gärtner K, Hüls C, Zeidler R, Ramanujam D, Engelhardt S, Wenk C, Holdt LM, Mononen M, Sahara M, Cleuziou J, Hörer J, Lange R, Krane M, Doppler SA (2022)
Uncovering the molecular identity of cardiosphere-derived cells (CDCs) by single-cell RNA sequencing.
Basic research in cardiology, Issue 1, Vol. 117, 11
DOI: 10.1007/s00395-022-00913-y, PubMed: 35258704 |
Schuhmann P, Engstler C, Klöpfer K, Gügel IL, Abbadi A, Dreyer F, Leckband G, Bölter B, Hagn F, Soll J, Carrie C (2022)
Two wrongs make a right: heat stress reversion of a male-sterile Brassica napus line.
Journal of experimental botany, Issue 11, Vol. 73, 3531-3551
DOI: 10.1093/jxb/erac082, PubMed: 35226731 |
Zinngrebe J, Moepps B, Monecke T, Gierschik P, Schlichtig F, Barth TFE, Strauß G, Boldrin E, Posovszky C, Schulz A, Beringer O, Rieser E, Jacobsen EM, Lorenz MR, Schwarz K, Pannicke U, Walczak H, Niessing D, Schuetz C, Fischer-Posovszky P, Debatin KM (2022)
Compound heterozygous variants in OTULIN are associated with fulminant atypical late-onset ORAS.
EMBO molecular medicine, Issue 3, Vol. 14, e14901
DOI: 10.15252/emmm.202114901, PubMed: 35170849 |
Jones AN, Tikhaia E, Mourão A, Sattler M (2022)
Structural effects of m6A modification of the Xist A-repeat AUCG tetraloop and its recognition by YTHDC1.
Nucleic acids research, Issue 4, Vol. 50, 2350-2362
DOI: 10.1093/nar/gkac080, PubMed: 35166835 |
Rusanov AI, Dmitrieva OA, Mamardashvili NZ, Tetko IV (2022)
More Is Not Always Better: Local Models Provide Accurate Predictions of Spectral Properties of Porphyrins.
International journal of molecular sciences, Issue 3, Vol. 23
DOI: 10.3390/ijms23031201, PubMed: 35163123 |
Margreiter MA, Witzenberger M, Wasser Y, Davydova E, Janowski R, Metz J, Habib P, Sahnoun SEM, Sobisch C, Poma B, Palomino-Hernandez O, Wagner M, Carell T, Jon Shah N, Schulz JB, Niessing D, Voigt A, Rossetti G (2022)
Small-molecule modulators of TRMT2A decrease PolyQ aggregation and PolyQ-induced cell death.
Computational and structural biotechnology journal, Vol. 20, 443-458
DOI: 10.1016/j.csbj.2021.12.029, PubMed: 35070167 |
Biebl MM, Delhommel F, Faust O, Zak KM, Agam G, Guo X, Mühlhofer M, Dahiya V, Hillebrand D, Popowicz GM, Kampmann M, Lamb DC, Rosenzweig R, Sattler M, Buchner J (2022)
NudC guides client transfer between the Hsp40/70 and Hsp90 chaperone systems.
Molecular cell, Issue 3, Vol. 82, 555-569.e7
DOI: 10.1016/j.molcel.2021.12.031, PubMed: 35063133 |
Testa C, Papini AM, Zeidler R, Vullo D, Carta F, Supuran CT, Rovero P (2022)
First studies on tumor associated carbonic anhydrases IX and XII monoclonal antibodies conjugated to small molecule inhibitors.
Journal of enzyme inhibition and medicinal chemistry, Issue 1, Vol. 37, 592-596
DOI: 10.1080/14756366.2021.2004593, PubMed: 35057692 |
Napolitano V, Dabrowska A, Schorpp K, Mourão A, Barreto-Duran E, Benedyk M, Botwina P, Brandner S, Bostock M, Chykunova Y, Czarna A, Dubin G, Fröhlich T, Hölscher M, Jedrysik M, Matsuda A, Owczarek K, Pachota M, Plettenburg O, Potempa J, Rothenaigner I, Schlauderer F, Slysz K, Szczepanski A, Greve-Isdahl Mohn K, Blomberg B, Sattler M, Hadian K, Popowicz GM, Pyrc K (2022)
Acriflavine, a clinically approved drug, inhibits SARS-CoV-2 and other betacoronaviruses.
Cell chemical biology, Issue 5, Vol. 29, 774-784.e8
DOI: 10.1016/j.chembiol.2021.11.006, PubMed: 35021060 |
Li M, Gaussmann S, Tippler B, Ott J, Popowicz GM, Schliebs W, Sattler M, Erdmann R, Kalel VC (2021)
Novel Trypanocidal Inhibitors that Block Glycosome Biogenesis by Targeting PEX3-PEX19 Interaction.
Frontiers in cell and developmental biology, Vol. 9, 737159
DOI: 10.3389/fcell.2021.737159, PubMed: 34988071 |
Lopez A, Dahiya V, Delhommel F, Freiburger L, Stehle R, Asami S, Rutz D, Blair L, Buchner J, Sattler M (2021)
Client binding shifts the populations of dynamic Hsp90 conformations through an allosteric network.
Science advances, Issue 51, Vol. 7, eabl7295
DOI: 10.1126/sciadv.abl7295, PubMed: 34919431 |
Olguín-Contreras LF, Mendler AN, Popowicz G, Hu B, Noessner E (2021)
Double Strike Approach for Tumor Attack: Engineering T Cells Using a CD40L:CD28 Chimeric Co-Stimulatory Switch Protein for Enhanced Tumor Targeting in Adoptive Cell Therapy.
Frontiers in immunology, Vol. 12, 750478
DOI: 10.3389/fimmu.2021.750478, PubMed: 34912334 |
Bernaudat F, Gustems M, Günther J, Oliva MF, Buschle A, Göbel C, Pagniez P, Lupo J, Signor L, Müller CW, Morand P, Sattler M, Hammerschmidt W, Petosa C (2022)
Structural basis of DNA methylation-dependent site selectivity of the Epstein-Barr virus lytic switch protein ZEBRA/Zta/BZLF1.
Nucleic acids research, Issue 1, Vol. 50, 490-511
DOI: 10.1093/nar/gkab1183, PubMed: 34893887 |
Sahoo BR, Souders 2nd CL, Watanabe-Nakayama T, Deng Z, Linton H, Suladze S, Ivanova MI, Reif B, Ando T, Martyniuk CJ, Ramamoorthy A (2022)
Conformational Tuning of Amylin by Charged Styrene-Maleic-Acid Copolymers.
Journal of molecular biology, Issue 2, Vol. 434, 167385
DOI: 10.1016/j.jmb.2021.167385, PubMed: 34883118 |
Albanese M, Chen YA, Hüls C, Gärtner K, Tagawa T, Mejias-Perez E, Keppler OT, Göbel C, Zeidler R, Shein M, Schütz AK, Hammerschmidt W (2021)
MicroRNAs are minor constituents of extracellular vesicles that are rarely delivered to target cells.
PLoS genetics, Issue 12, Vol. 17, e1009951
DOI: 10.1371/journal.pgen.1009951, PubMed: 34871319 |
Reif B (2022)
Deuteration for High-Resolution Detection of Protons in Protein Magic Angle Spinning (MAS) Solid-State NMR.
Chemical reviews, Issue 10, Vol. 122, 10019-10035
DOI: 10.1021/acs.chemrev.1c00681, PubMed: 34870415 |
Borchard S, Raschke S, Zak KM, Eberhagen C, Einer C, Weber E, Müller SM, Michalke B, Lichtmannegger J, Wieser A, Rieder T, Popowicz GM, Adamski J, Klingenspor M, Coles AH, Viana R, Vendelbo MH, Sandahl TD, Schwerdtle T, Plitz T, Zischka H (2022)
Bis-choline tetrathiomolybdate prevents copper-induced blood-brain barrier damage.
Life science alliance, Issue 3, Vol. 5
DOI: 10.26508/lsa.202101164, PubMed: 34857647 |
Mishra K, Fuenzalida-Werner JP, Pennacchietti F, Janowski R, Chmyrov A, Huang Y, Zakian C, Klemm U, Testa I, Niessing D, Ntziachristos V, Stiel AC (2022)
Genetically encoded photo-switchable molecular sensors for optoacoustic and super-resolution imaging.
Nature biotechnology, Issue 4, Vol. 40, 598-605
DOI: 10.1038/s41587-021-01100-5, PubMed: 34845372 |
Behrens G, Edelmann SL, Raj T, Kronbeck N, Monecke T, Davydova E, Wong EH, Kifinger L, Giesert F, Kirmaier ME, Hohn C, de Jonge LS, Pisfil MG, Fu M, Theurich S, Feske S, Kawakami N, Wurst W, Niessing D, Heissmeyer V (2021)
Disrupting Roquin-1 interaction with Regnase-1 induces autoimmunity and enhances antitumor responses.
Nature immunology, Issue 12, Vol. 22, 1563-1576
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Mühlhofer M, Peters C, Kriehuber T, Kreuzeder M, Kazman P, Rodina N, Reif B, Haslbeck M, Weinkauf S, Buchner J (2021)
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Structural and functional characterization of SplA, an exclusively specific protease of Staphylococcus aureus.
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Biochemistry, Issue 10, Vol. 48, 2216-25
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The Journal of biological chemistry, Issue 6, Vol. 284, 4031-9
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Journal of the American Chemical Society, Issue 1, Vol. 131, 2-3
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Journal of the American Chemical Society, Issue 49, Vol. 130, 16611-21
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A NMR strategy to unambiguously distinguish nucleic acid hairpin and duplex conformations applied to a Xist RNA A-repeat.
Nucleic acids research, Issue 22, Vol. 36, 7068-77
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Screening of fusion partners for high yield expression and purification of bioactive viscotoxins.
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The Journal of biological chemistry, Issue 1, Vol. 284, 630-639
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Structure of the intracellular domain of the amyloid precursor protein in complex with Fe65-PTB2.
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Protein science : a publication of the Protein Society, Issue 12, Vol. 17, 2070-9
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MitoP2: an integrative tool for the analysis of the mitochondrial proteome.
Molecular biotechnology, Issue 3, Vol. 40, 306-15
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Critical assessment of QSAR models of environmental toxicity against Tetrahymena pyriformis: focusing on applicability domain and overfitting by variable selection.
Journal of chemical information and modeling, Issue 9, Vol. 48, 1733-46
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Surmeli D, Ratmann O, Mewes HW, Tetko IV (2008)
FunCat functional inference with belief propagation and feature integration.
Computational biology and chemistry, Issue 5, Vol. 32, 375-7
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Mannhold R, Poda GI, Ostermann C, Tetko IV (2009)
Calculation of molecular lipophilicity: State-of-the-art and comparison of log P methods on more than 96,000 compounds.
Journal of pharmaceutical sciences, Issue 3, Vol. 98, 861-93
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Rothweiler U, Czarna A, Weber L, Popowicz GM, Brongel K, Kowalska K, Orth M, Stemmann O, Holak TA (2008)
NMR screening for lead compounds using tryptophan-mutated proteins.
Journal of medicinal chemistry, Issue 16, Vol. 51, 5035-42
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Popowicz GM, Czarna A, Holak TA (2008)
Structure of the human Mdmx protein bound to the p53 tumor suppressor transactivation domain.
Cell cycle (Georgetown, Tex.), Issue 15, Vol. 7, 2441-3
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Journal of magnetic resonance (San Diego, Calif. : 1997), Issue 1, Vol. 194, 16-24
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EMBO reports, Issue 8, Vol. 9, 781-7
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Enzymatic activity of the Staphylococcus aureus SplB serine protease is induced by substrates containing the sequence Trp-Glu-Leu-Gln.
Journal of molecular biology, Issue 2, Vol. 379, 343-56
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Zhu H, Tropsha A, Fourches D, Varnek A, Papa E, Gramatica P, Oberg T, Dao P, Cherkasov A, Tetko IV (2008)
Combinatorial QSAR modeling of chemical toxicants tested against Tetrahymena pyriformis.
Journal of chemical information and modeling, Issue 4, Vol. 48, 766-84
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Calculation of lipophilicity for Pt(II) complexes: experimental comparison of several methods.
Journal of inorganic biochemistry, Issue 7, Vol. 102, 1424-37
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Journal of molecular biology, Issue 5, Vol. 376, 1523
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Measurement of 15N-T1 relaxation rates in a perdeuterated protein by magic angle spinning solid-state nuclear magnetic resonance spectroscopy.
The Journal of chemical physics, Issue 5, Vol. 128, 052316
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Conditional immortalization of human B cells by CD40 ligation.
PloS one, Issue 1, Vol. 3, e1464
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Structure of the Eps15-stonin2 complex provides a molecular explanation for EH-domain ligand specificity.
The EMBO journal, Issue 3, Vol. 27, 558-69
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Kaden D, Munter LM, Joshi M, Treiber C, Weise C, Bethge T, Voigt P, Schaefer M, Beyermann M, Reif B, Multhaup G (2008)
Homophilic interactions of the amyloid precursor protein (APP) ectodomain are regulated by the loop region and affect beta-secretase cleavage of APP.
The Journal of biological chemistry, Issue 11, Vol. 283, 7271-9
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Tetko IV, Rodchenkov IV, Walter MC, Rattei T, Mewes HW (2008)
Beyond the 'best' match: machine learning annotation of protein sequences by integration of different sources of information.
Bioinformatics (Oxford, England), Issue 5, Vol. 24, 621-8
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Quantitative measurement of differential 15N-H(alpha/beta)T2 relaxation rates in a perdeuterated protein by MAS solid-state NMR spectroscopy.
Magnetic resonance in chemistry : MRC, Vol. 45 Suppl 1, S156-60
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Monomeric myosin V uses two binding regions for the assembly of stable translocation complexes.
Proceedings of the National Academy of Sciences of the United States of America, Issue 50, Vol. 104, 19778-83
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Black SL, Stanley WA, Filipp FV, Bhairo M, Verma A, Wichmann O, Sattler M, Wilmanns M, Schultz C (2008)
Probing lipid- and drug-binding domains with fluorescent dyes.
Bioorganic & medicinal chemistry, Issue 3, Vol. 16, 1162-73
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Albermann K, Lang S, Zeidler R (2007)
Molecular profiling for the identification of new biomarkers in smokers and cancer patients.
Cancer genomics & proteomics, Issue 5, Vol. 4, 349-58
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Agarwal V, Fink U, Schuldiner S, Reif B (2007)
MAS solid-state NMR studies on the multidrug transporter EmrE.
Biochimica et biophysica acta, Issue 12, Vol. 1768, 3036-43
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Molecular basis for the inhibition of p53 by Mdmx.
Cell cycle (Georgetown, Tex.), Issue 19, Vol. 6, 2386-92
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Linser R, Chevelkov V, Diehl A, Reif B (2007)
Sensitivity enhancement using paramagnetic relaxation in MAS solid-state NMR of perdeuterated proteins.
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Combined analysis of (15)N relaxation data from solid- and solution-state NMR spectroscopy.
Journal of the American Chemical Society, Issue 42, Vol. 129, 12594-5
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Bergmann C, Strauss L, Zeidler R, Lang S, Whiteside TL (2007)
Expansion of human T regulatory type 1 cells in the microenvironment of cyclooxygenase 2 overexpressing head and neck squamous cell carcinoma.
Cancer research, Issue 18, Vol. 67, 8865-73
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Zeidler R, Albermann K, Lang S (2007)
Nicotine and apoptosis.
Apoptosis : an international journal on programmed cell death, Issue 11, Vol. 12, 1927-43
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The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization.
Science (New York, N.Y.), Issue 5843, Vol. 317, 1400-2
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Chevelkov V, Faelber K, Schrey A, Rehbein K, Diehl A, Reif B (2007)
Differential line broadening in MAS solid-state NMR due to dynamic interference.
Journal of the American Chemical Society, Issue 33, Vol. 129, 10195-200
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Corsini L, Bonnal S, Basquin J, Hothorn M, Scheffzek K, Valcárcel J, Sattler M (2007)
U2AF-homology motif interactions are required for alternative splicing regulation by SPF45.
Nature structural & molecular biology, Issue 7, Vol. 14, 620-9
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Singh M, Popowicz GM, Krajewski M, Holak TA (2007)
Structural ramification for acetyl-lysine recognition by the bromodomain of human BRG1 protein, a central ATPase of the SWI/SNF remodeling complex.
Chembiochem : a European journal of chemical biology, Issue 11, Vol. 8, 1308-16
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Filipp FV, Sattler M (2007)
Conformational plasticity of the lipid transfer protein SCP2.
Biochemistry, Issue 27, Vol. 46, 7980-91
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Xue Y, Pavlova MS, Ryabov YE, Reif B, Skrynnikov NR (2007)
Methyl rotation barriers in proteins from 2H relaxation data. Implications for protein structure.
Journal of the American Chemical Society, Issue 21, Vol. 129, 6827-38
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Kovalishyn VV, Kholodovych V, Tetko IV, Welsh WJ (2007)
Volume learning algorithm significantly improved PLS model for predicting the estrogenic activity of xenoestrogens.
Journal of molecular graphics & modelling, Issue 2, Vol. 26, 591-4
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Brumbaugh J, Schleifenbaum A, Stier G, Sattler M, Schultz C (2006)
Single- and dual-parameter FRET kinase probes based on pleckstrin.
Nature protocols, Issue 2, Vol. 1, 1044-55
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Lang S, Tiwari S, Andratschke M, Loehr I, Lauffer L, Bergmann C, Mack B, Lebeau A, Moosmann A, Whiteside TL, Zeidler R (2007)
Immune restoration in head and neck cancer patients after in vivo COX-2 inhibition.
Cancer immunology, immunotherapy : CII, Issue 10, Vol. 56, 1645-52
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Varnek A, Kireeva N, Tetko IV, Baskin II, Solov'ev VP (2007)
Exhaustive QSPR studies of a large diverse set of ionic liquids: how accurately can we predict melting points?
Journal of chemical information and modeling, Issue 3, Vol. 47, 1111-22
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Biodistribution and radioimmunotherapy of SCCHN in xenotransplantated SCID mice with a 131I-labelled anti-EpCAM monoclonal antibody.
Anticancer research, Issue 1A, Vol. 27, 431-6
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Zentz C, Wiesner M, Man S, Frankenberger B, Wollenberg B, Hillemanns P, Zeidler R, Hammerschmidt W, Moosmann A (2007)
Activated B cells mediate efficient expansion of rare antigen-specific T cells.
Human immunology, Issue 2, Vol. 68, 75-85
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Corsini L, Sattler M (2007)
Tudor hooks up with DNA repair.
Nature structural & molecular biology, Issue 2, Vol. 14, 98-9
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Farré-Castany MA, Schwaller B, Gregory P, Barski J, Mariethoz C, Eriksson JL, Tetko IV, Wolfer D, Celio MR, Schmutz I, Albrecht U, Villa AE (2007)
Differences in locomotor behavior revealed in mice deficient for the calcium-binding proteins parvalbumin, calbindin D-28k or both.
Behavioural brain research, Issue 2, Vol. 178, 250-61
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Expansion and characteristics of human T regulatory type 1 cells in co-cultures simulating tumor microenvironment.
Cancer immunology, immunotherapy : CII, Issue 9, Vol. 56, 1429-42
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Emmersen J, Rudd S, Mewes HW, Tetko IV (2007)
Separation of sequences from host-pathogen interface using triplet nucleotide frequencies.
Fungal genetics and biology : FG & B, Issue 4, Vol. 44, 231-41
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Verdoodt B, Benzinger A, Popowicz GM, Holak TA, Hermeking H (2006)
Characterization of 14-3-3sigma dimerization determinants: requirement of homodimerization for inhibition of cell proliferation.
Cell cycle (Georgetown, Tex.), Issue 24, Vol. 5, 2920-6
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Oddone A, Lorentzen E, Basquin J, Gasch A, Rybin V, Conti E, Sattler M (2007)
Structural and biochemical characterization of the yeast exosome component Rrp40.
EMBO reports, Issue 1, Vol. 8, 63-9
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Stanley WA, Filipp FV, Kursula P, Schüller N, Erdmann R, Schliebs W, Sattler M, Wilmanns M (2006)
Recognition of a functional peroxisome type 1 target by the dynamic import receptor pex5p.
Molecular cell, Issue 5, Vol. 24, 653-663
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Feige MJ, Hagn F, Esser J, Kessler H, Buchner J (2007)
Influence of the internal disulfide bridge on the folding pathway of the CL antibody domain.
Journal of molecular biology, Issue 4, Vol. 365, 1232-44
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Narayanan S, Kamps B, Boelens WC, Reif B (2006)
alphaB-crystallin competes with Alzheimer's disease beta-amyloid peptide for peptide-peptide interactions and induces oxidation of Abeta-Met35.
FEBS letters, Issue 25, Vol. 580, 5941-6
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Heller M, Sukopp M, Tsomaia N, John M, Mierke DF, Reif B, Kessler H (2006)
The conformation of cyclo(-D-Pro-Ala4-) as a model for cyclic pentapeptides of the DL4 type.
Journal of the American Chemical Society, Issue 42, Vol. 128, 13806-14
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Agarwal V, Diehl A, Skrynnikov N, Reif B (2006)
High resolution 1H detected 1H,13C correlation spectra in MAS solid-state NMR using deuterated proteins with selective 1H,2H isotopic labeling of methyl groups.
Journal of the American Chemical Society, Issue 39, Vol. 128, 12620-1
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Reif B, Xue Y, Agarwal V, Pavlova MS, Hologne M, Diehl A, Ryabov YE, Skrynnikov NR (2006)
Protein side-chain dynamics observed by solution- and solid-state NMR: comparative analysis of methyl 2H relaxation data.
Journal of the American Chemical Society, Issue 38, Vol. 128, 12354-5
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Ahlemann M, Zeidler R, Lang S, Mack B, Münz M, Gires O (2006)
Carcinoma-associated eIF3i overexpression facilitates mTOR-dependent growth transformation.
Molecular carcinogenesis, Issue 12, Vol. 45, 957-67
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Sitar T, Popowicz GM, Siwanowicz I, Huber R, Holak TA (2006)
Structural basis for the inhibition of insulin-like growth factors by insulin-like growth factor-binding proteins.
Proceedings of the National Academy of Sciences of the United States of America, Issue 35, Vol. 103, 13028-33
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Messias AC, Harnisch C, Ostareck-Lederer A, Sattler M, Ostareck DH (2006)
The DICE-binding activity of KH domain 3 of hnRNP K is affected by c-Src-mediated tyrosine phosphorylation.
Journal of molecular biology, Issue 3, Vol. 361, 470-81
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Tetko IV, Bruneau P, Mewes HW, Rohrer DC, Poda GI (2006)
Can we estimate the accuracy of ADME-Tox predictions?
Drug discovery today, Issue 15-16, Vol. 11, 700-7
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Soares LM, Zanier K, Mackereth C, Sattler M, Valcárcel J (2006)
Intron removal requires proofreading of U2AF/3' splice site recognition by DEK.
Science (New York, N.Y.), Issue 5782, Vol. 312, 1961-5
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Popowicz GM, Schleicher M, Noegel AA, Holak TA (2006)
Filamins: promiscuous organizers of the cytoskeleton.
Trends in biochemical sciences, Issue 7, Vol. 31, 411-9
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Evaluation of CK8-specific autoantibodies in carcinomas of distinct localisations.
Anticancer research, Issue 1B, Vol. 26, 783-9
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Lescrinier E, Nauwelaerts K, Zanier K, Poesen K, Sattler M, Herdewijn P (2006)
The naturally occurring N6-threonyl adenine in anticodon loop of Schizosaccharomyces pombe tRNAi causes formation of a unique U-turn motif.
Nucleic acids research, Issue 10, Vol. 34, 2878-86
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Kang CB, Ye H, Vivekanandan S, Simon B, Sattler M, Yoon HS (2006)
Backbone 1H, 13C, and 15N resonance assignments of the N-terminal domain of FKBP38 (FKBP38NTD).
Journal of biomolecular NMR, Vol. 36 Suppl 1, 37
DOI: 10.1007/s10858-006-9001-5, PubMed: 16718587 |
Mikolajka A, Yan X, Popowicz GM, Smialowski P, Nigg EA, Holak TA (2006)
Structure of the N-terminal domain of the FOP (FGFR1OP) protein and implications for its dimerization and centrosomal localization.
Journal of molecular biology, Issue 4, Vol. 359, 863-75
DOI: 10.1016/j.jmb.2006.03.070, PubMed: 16690081 |
Chevelkov V, Rehbein K, Diehl A, Reif B (2006)
Ultrahigh resolution in proton solid-state NMR spectroscopy at high levels of deuteration.
Angewandte Chemie (International ed. in English), Issue 23, Vol. 45, 3878-81
DOI: 10.1002/anie.200600328, PubMed: 16646097 |
Edlich C, Simon B, Sattler M, Muhle-Goll C (2006)
New NMR assignment 1H, 13C, and 15N assignment of the second PH domain of human pleckstrin (234-350).
Journal of biomolecular NMR, Vol. 36 Suppl 1, 21
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Tetko IV, Haberer G, Rudd S, Meyers B, Mewes HW, Mayer KF (2006)
Spatiotemporal expression control correlates with intragenic scaffold matrix attachment regions (S/MARs) in Arabidopsis thaliana.
PLoS computational biology, Issue 3, Vol. 2, e21
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Pimienta G, Gabel F, Zanier K, Conti E, Sattler M (2006)
Chemical shift backbone assignments of TAP-N, the 31 kDa cargo-binding region of the protein TAP.
Journal of biomolecular NMR, Vol. 36 Suppl 1, 23
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Narayanan S, Walter S, Reif B (2006)
Yeast prion-protein, sup35, fibril formation proceeds by addition and substraction of oligomers.
Chembiochem : a European journal of chemical biology, Issue 5, Vol. 7, 757-65
DOI: 10.1002/cbic.200500382, PubMed: 16570324 |
Tetko IV, Solov'ev VP, Antonov AV, Yao X, Doucet JP, Fan B, Hoonakker F, Fourches D, Jost P, Lachiche N, Varnek A (2006)
Benchmarking of linear and nonlinear approaches for quantitative structure-property relationship studies of metal complexation with ionophores.
Journal of chemical information and modeling, Issue 2, Vol. 46, 808-19
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Spadaccini R, Perrin H, Bottomley MJ, Ansieau S, Sattler M (2006)
Structure and functional analysis of the MYND domain.
Journal of molecular biology, Issue 2, Vol. 358, 498-508
DOI: 10.1016/j.jmb.2006.01.087, PubMed: 16527309 |
Mapelli M, Filipp FV, Rancati G, Massimiliano L, Nezi L, Stier G, Hagan RS, Confalonieri S, Piatti S, Sattler M, Musacchio A (2006)
Determinants of conformational dimerization of Mad2 and its inhibition by p31comet.
The EMBO journal, Issue 6, Vol. 25, 1273-84
DOI: 10.1038/sj.emboj.7601033, PubMed: 16525508 |
Popowicz GM, Dubin G, Stec-Niemczyk J, Czarny A, Dubin A, Potempa J, Holak TA (2006)
Functional and structural characterization of Spl proteases from Staphylococcus aureus.
Journal of molecular biology, Issue 1, Vol. 358, 270-9
DOI: 10.1016/j.jmb.2006.01.098, PubMed: 16516230 |
Spadaccini R, Reidt U, Dybkov O, Will C, Frank R, Stier G, Corsini L, Wahl MC, Lührmann R, Sattler M (2006)
Biochemical and NMR analyses of an SF3b155-p14-U2AF-RNA interaction network involved in branch point definition during pre-mRNA splicing.
RNA (New York, N.Y.), Issue 3, Vol. 12, 410-25
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Andratschke M, Hagedorn H, Luebbers CW, Schmitt B, Lang S, Zeidler R, Wollenberg B (2006)
Limited suitability of EpCAM for molecular staging of tumor borders in head and neck cancer.
Anticancer research, Issue 1A, Vol. 26, 153-8
PubMed: 16475692 |
Balakin KV, Savchuk NP, Tetko IV (2006)
In silico approaches to prediction of aqueous and DMSO solubility of drug-like compounds: trends, problems and solutions.
Current medicinal chemistry, Issue 2, Vol. 13, 223-41
DOI: 10.2174/092986706775197917, PubMed: 16472214 |
Richter K, Moser S, Hagn F, Friedrich R, Hainzl O, Heller M, Schlee S, Kessler H, Reinstein J, Buchner J (2006)
Intrinsic inhibition of the Hsp90 ATPase activity.
The Journal of biological chemistry, Issue 16, Vol. 281, 11301-11
DOI: 10.1074/jbc.M510142200, PubMed: 16461354 |
Gabel F, Simon B, Sattler M (2006)
A target function for quaternary structural refinement from small angle scattering and NMR orientational restraints.
European biophysics journal : EBJ, Issue 4, Vol. 35, 313-27
DOI: 10.1007/s00249-005-0037-3, PubMed: 16416140 |
Antonov AV, Tetko IV, Mewes HW (2006)
A systematic approach to infer biological relevance and biases of gene network structures.
Nucleic acids research, Issue 1, Vol. 34, e6
DOI: 10.1093/nar/gnj002, PubMed: 16407322 |
Brumbaugh J, Schleifenbaum A, Gasch A, Sattler M, Schultz C (2006)
A dual parameter FRET probe for measuring PKC and PKA activity in living cells.
Journal of the American Chemical Society, Issue 1, Vol. 128, 24-5
DOI: 10.1021/ja0562200, PubMed: 16390103 |
Scholz C, Eckert B, Hagn F, Schaarschmidt P, Balbach J, Schmid FX (2006)
SlyD proteins from different species exhibit high prolyl isomerase and chaperone activities.
Biochemistry, Issue 1, Vol. 45, 20-33
DOI: 10.1021/bi051922n, PubMed: 16388577 |
Ruepp A, Doudieu ON, van den Oever J, Brauner B, Dunger-Kaltenbach I, Fobo G, Frishman G, Montrone C, Skornia C, Wanka S, Rattei T, Pagel P, Riley L, Frishman D, Surmeli D, Tetko IV, Oesterheld M, Stümpflen V, Mewes HW (2006)
The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context.
Nucleic acids research, Issue Database issue, Vol. 34, D568-71
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Walz A, Andratschke M, Wollenberg B, Lindhofer H, Zeidler R (2005)
Prednisolone reduces TNF-alpha release by PBMCs activated with a trifunctional bispecific antibody but not their anti-tumor activity.
Anticancer research, Issue 6B, Vol. 25, 4239-43
PubMed: 16309222 |
Hologne M, Chen Z, Reif B (2006)
Characterization of dynamic processes using deuterium in uniformly 2H,13C,15N enriched peptides by MAS solid-state NMR.
Journal of magnetic resonance (San Diego, Calif. : 1997), Issue 1, Vol. 179, 20-8
DOI: 10.1016/j.jmr.2005.10.014, PubMed: 16289962 |
Vojnic E, Simon B, Strahl BD, Sattler M, Cramer P (2006)
Structure and carboxyl-terminal domain (CTD) binding of the Set2 SRI domain that couples histone H3 Lys36 methylation to transcription.
The Journal of biological chemistry, Issue 1, Vol. 281, 13-5
DOI: 10.1074/jbc.C500423200, PubMed: 16286474 |
Chen Z, Krause G, Reif B (2005)
Structure and orientation of peptide inhibitors bound to beta-amyloid fibrils.
Journal of molecular biology, Issue 4, Vol. 354, 760-76
DOI: 10.1016/j.jmb.2005.09.055, PubMed: 16271725 |
Lingel A, Simon B, Izaurralde E, Sattler M (2005)
The structure of the flock house virus B2 protein, a viral suppressor of RNA interference, shows a novel mode of double-stranded RNA recognition.
EMBO reports, Issue 12, Vol. 6, 1149-55
DOI: 10.1038/sj.embor.7400583, PubMed: 16270100 |
Tetko IV, Abagyan R, Oprea TI (2005)
Surrogate data--a secure way to share corporate data.
Journal of computer-aided molecular design, Issue 9-10, Vol. 19, 749-64
DOI: 10.1007/s10822-005-9013-3, PubMed: 16267691 |
Tetko IV (2005)
Computing chemistry on the web.
Drug discovery today, Issue 22, Vol. 10, 1497-500
DOI: 10.1016/S1359-6446(05)03584-1, PubMed: 16257371 |
Tetko IV, Gasteiger J, Todeschini R, Mauri A, Livingstone D, Ertl P, Palyulin VA, Radchenko EV, Zefirov NS, Makarenko AS, Tanchuk VY, Prokopenko VV (2005)
Virtual computational chemistry laboratory--design and description.
Journal of computer-aided molecular design, Issue 6, Vol. 19, 453-63
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Wiesner S, Hantschel O, Mackereth CD, Superti-Furga G, Sattler M (2005)
NMR Assignment Reveals an alpha-Helical Fold for the F-Actin Binding Domain of Human Bcr-Abl/c-Abl.
Journal of biomolecular NMR, Issue 4, Vol. 32, 335
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Arolas JL, Popowicz GM, Bronsoms S, Aviles FX, Huber R, Holak TA, Ventura S (2005)
Study of a major intermediate in the oxidative folding of leech carboxypeptidase inhibitor: contribution of the fourth disulfide bond.
Journal of molecular biology, Issue 4, Vol. 352, 961-75
DOI: 10.1016/j.jmb.2005.07.065, PubMed: 16126224 |
Hantschel O, Wiesner S, Güttler T, Mackereth CD, Rix LL, Mikes Z, Dehne J, Görlich D, Sattler M, Superti-Furga G (2005)
Structural basis for the cytoskeletal association of Bcr-Abl/c-Abl.
Molecular cell, Issue 4, Vol. 19, 461-73
DOI: 10.1016/j.molcel.2005.06.030, PubMed: 16109371 |
Hologne M, Faelber K, Diehl A, Reif B (2005)
Characterization of dynamics of perdeuterated proteins by MAS solid-state NMR.
Journal of the American Chemical Society, Issue 32, Vol. 127, 11208-9
DOI: 10.1021/ja051830l, PubMed: 16089426 |
Arolas JL, D'Silva L, Popowicz GM, Aviles FX, Holak TA, Ventura S (2005)
NMR structural characterization and computational predictions of the major intermediate in oxidative folding of leech carboxypeptidase inhibitor.
Structure (London, England : 1993), Issue 8, Vol. 13, 1193-202
DOI: 10.1016/j.str.2005.05.008, PubMed: 16084391 |
Mackereth CD, Simon B, Sattler M (2005)
Extending the size of protein-RNA complexes studied by nuclear magnetic resonance spectroscopy.
Chembiochem : a European journal of chemical biology, Issue 9, Vol. 6, 1578-84
DOI: 10.1002/cbic.200500106, PubMed: 16075426 |
Antonov AV, Tetko IV, Kosykh D, Surmeli D, Mewes HW (2005)
Exploiting scale-free information from expression data for cancer classification.
Computational biology and chemistry, Issue 4, Vol. 29, 288-93
DOI: 10.1016/j.compbiolchem.2005.06.004, PubMed: 16039906 |
Backe PH, Messias AC, Ravelli RB, Sattler M, Cusack S (2005)
X-ray crystallographic and NMR studies of the third KH domain of hnRNP K in complex with single-stranded nucleic acids.
Structure (London, England : 1993), Issue 7, Vol. 13, 1055-67
DOI: 10.1016/j.str.2005.04.008, PubMed: 16004877 |
Rudd S, Tetko IV (2005)
Eclair--a web service for unravelling species origin of sequences sampled from mixed host interfaces.
Nucleic acids research, Issue Web Server issue, Vol. 33, W724-7
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Wiesner M, Zentz C, Hammer MH, Cobbold M, Kern F, Kolb HJ, Hammerschmidt W, Zeidler R, Moosmann A (2005)
Selection of CMV-specific CD8+ and CD4+ T cells by mini-EBV-transformed B cell lines.
European journal of immunology, Issue 7, Vol. 35, 2110-21
DOI: 10.1002/eji.200425936, PubMed: 15971271 |
Arolas JL, Popowicz GM, Lorenzo J, Sommerhoff CP, Huber R, Aviles FX, Holak TA (2005)
The three-dimensional structures of tick carboxypeptidase inhibitor in complex with A/B carboxypeptidases reveal a novel double-headed binding mode.
Journal of molecular biology, Issue 3, Vol. 350, 489-98
DOI: 10.1016/j.jmb.2005.05.015, PubMed: 15961103 |
Chevelkov V, Faelber K, Diehl A, Heinemann U, Oschkinat H, Reif B (2005)
Detection of dynamic water molecules in a microcrystalline sample of the SH3 domain of alpha-spectrin by MAS solid-state NMR.
Journal of biomolecular NMR, Issue 4, Vol. 31, 295-310
DOI: 10.1007/s10858-005-1718-z, PubMed: 15928996 |
Münz M, Zeidler R, Gires O (2005)
The tumour-associated antigen EpCAM upregulates the fatty acid binding protein E-FABP.
Cancer letters, Issue 1, Vol. 225, 151-7
DOI: 10.1016/j.canlet.2004.11.048, PubMed: 15922867 |
Benzinger A, Popowicz GM, Joy JK, Majumdar S, Holak TA, Hermeking H (2005)
The crystal structure of the non-liganded 14-3-3sigma protein: insights into determinants of isoform specific ligand binding and dimerization.
Cell research, Issue 4, Vol. 15, 219-27
DOI: 10.1038/sj.cr.7290290, PubMed: 15857576 |
Markwick PR, Sprangers R, Sattler M (2005)
Local structure and anisotropic backbone dynamics from cross-correlated NMR relaxation in proteins.
Angewandte Chemie (International ed. in English), Issue 21, Vol. 44, 3232-7
DOI: 10.1002/anie.200462495, PubMed: 15844105 |
Tetko IV, Facius A, Ruepp A, Mewes HW (2005)
Super paramagnetic clustering of protein sequences.
BMC bioinformatics, Vol. 6, 82
DOI: 10.1186/1471-2105-6-82, PubMed: 15804359 |
Tetko IV, Brauner B, Dunger-Kaltenbach I, Frishman G, Montrone C, Fobo G, Ruepp A, Antonov AV, Surmeli D, Mewes HW (2005)
MIPS bacterial genomes functional annotation benchmark dataset.
Bioinformatics (Oxford, England), Issue 10, Vol. 21, 2520-1
DOI: 10.1093/bioinformatics/bti380, PubMed: 15769832 |
Lingel A, Sattler M (2005)
Novel modes of protein-RNA recognition in the RNAi pathway.
Current opinion in structural biology, Issue 1, Vol. 15, 107-15
DOI: 10.1016/j.sbi.2005.01.010, PubMed: 15718141 |
Edlich C, Stier G, Simon B, Sattler M, Muhle-Goll C (2005)
Structure and phosphatidylinositol-(3,4)-bisphosphate binding of the C-terminal PH domain of human pleckstrin.
Structure (London, England : 1993), Issue 2, Vol. 13, 277-86
DOI: 10.1016/j.str.2004.11.012, PubMed: 15698571 |
Narayanan S, Reif B (2005)
Characterization of chemical exchange between soluble and aggregated states of beta-amyloid by solution-state NMR upon variation of salt conditions.
Biochemistry, Issue 5, Vol. 44, 1444-52
DOI: 10.1021/bi048264b, PubMed: 15683229 |
Wang Y, Tetko IV, Hall MA, Frank E, Facius A, Mayer KF, Mewes HW (2005)
Gene selection from microarray data for cancer classification--a machine learning approach.
Computational biology and chemistry, Issue 1, Vol. 29, 37-46
DOI: 10.1016/j.compbiolchem.2004.11.001, PubMed: 15680584 |
Bottomley MJ, Stier G, Pennacchini D, Legube G, Simon B, Akhtar A, Sattler M, Musco G (2005)
NMR structure of the first PHD finger of autoimmune regulator protein (AIRE1). Insights into autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy (APECED) disease.
The Journal of biological chemistry, Issue 12, Vol. 280, 11505-12
DOI: 10.1074/jbc.M413959200, PubMed: 15649886 |
Sattler MA, Mtasiwa D, Kiama M, Premji Z, Tanner M, Killeen GF, Lengeler C (2005)
Habitat characterization and spatial distribution of Anopheles sp. mosquito larvae in Dar es Salaam (Tanzania) during an extended dry period.
Malaria journal, Vol. 4, 4
DOI: 10.1186/1475-2875-4-4, PubMed: 15649333 |
Siwanowicz I, Popowicz GM, Wisniewska M, Huber R, Kuenkele KP, Lang K, Engh RA, Holak TA (2005)
Structural basis for the regulation of insulin-like growth factors by IGF binding proteins.
Structure (London, England : 1993), Issue 1, Vol. 13, 155-67
DOI: 10.1016/j.str.2004.11.009, PubMed: 15642270 |
Chevelkov V, Chen Z, Bermel W, Reif B (2005)
Resolution enhancement in MAS solid-state NMR by application of 13C homonuclear scalar decoupling during acquisition.
Journal of magnetic resonance (San Diego, Calif. : 1997), Issue 1, Vol. 172, 56-62
DOI: 10.1016/j.jmr.2004.09.017, PubMed: 15589408 |
Friedel CC, Jahn KH, Sommer S, Rudd S, Mewes HW, Tetko IV (2005)
Support vector machines for separation of mixed plant-pathogen EST collections based on codon usage.
Bioinformatics (Oxford, England), Issue 8, Vol. 21, 1383-8
DOI: 10.1093/bioinformatics/bti200, PubMed: 15585526 |
Civera C, Simon B, Stier G, Sattler M, Macias MJ (2005)
Structure and dynamics of the human pleckstrin DEP domain: distinct molecular features of a novel DEP domain subfamily.
Proteins, Issue 2, Vol. 58, 354-66
DOI: 10.1002/prot.20320, PubMed: 15573383 |
Niessing D, Hüttelmaier S, Zenklusen D, Singer RH, Burley SK (2004)
She2p is a novel RNA binding protein with a basic helical hairpin motif.
Cell, Issue 4, Vol. 119, 491-502
DOI: 10.1016/j.cell.2004.10.018, PubMed: 15537539 |
Tetko IV, Bruneau P (2004)
Application of ALOGPS to predict 1-octanol/water distribution coefficients, logP, and logD, of AstraZeneca in-house database.
Journal of pharmaceutical sciences, Issue 12, Vol. 93, 3103-10
DOI: 10.1002/jps.20217, PubMed: 15514985 |
Tetko IV, Poda GI (2004)
Application of ALOGPS 2.1 to predict log D distribution coefficient for Pfizer proprietary compounds.
Journal of medicinal chemistry, Issue 23, Vol. 47, 5601-4
DOI: 10.1021/jm049509l, PubMed: 15509156 |
Ruepp A, Zollner A, Maier D, Albermann K, Hani J, Mokrejs M, Tetko I, Güldener U, Mannhaupt G, Münsterkötter M, Mewes HW (2004)
The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes.
Nucleic acids research, Issue 18, Vol. 32, 5539-45
DOI: 10.1093/nar/gkh894, PubMed: 15486203 |
Schleifenbaum A, Stier G, Gasch A, Sattler M, Schultz C (2004)
Genetically encoded FRET probe for PKC activity based on pleckstrin.
Journal of the American Chemical Society, Issue 38, Vol. 126, 11786-7
DOI: 10.1021/ja0460155, PubMed: 15382901 |
Markwick PR, Sattler M (2004)
Site-specific variations of carbonyl chemical shift anisotropies in proteins.
Journal of the American Chemical Society, Issue 37, Vol. 126, 11424-5
DOI: 10.1021/ja047859r, PubMed: 15366873 |
Popowicz GM, Müller R, Noegel AA, Schleicher M, Huber R, Holak TA (2004)
Molecular structure of the rod domain of dictyostelium filamin.
Journal of molecular biology, Issue 5, Vol. 342, 1637-46
DOI: 10.1016/j.jmb.2004.08.017, PubMed: 15364587 |
Rauch J, Ahlemann M, Schaffrik M, Mack B, Ertongur S, Andratschke M, Zeidler R, Lang S, Gires O (2004)
Allogenic antibody-mediated identification of head and neck cancer antigens.
Biochemical and biophysical research communications, Issue 1, Vol. 323, 156-62
DOI: 10.1016/j.bbrc.2004.08.071, PubMed: 15351715 |
Chen Z, Reif B (2004)
Measurements of residual dipolar couplings in peptide inhibitors weakly aligned by transient binding to peptide amyloid fibrils.
Journal of biomolecular NMR, Issue 4, Vol. 29, 525-30
DOI: 10.1023/B:JNMR.0000034353.98902.4f, PubMed: 15243183 |
Peng C, Unger SW, Filipp FV, Sattler M, Szalma S (2004)
Automated evaluation of chemical shift perturbation spectra: New approaches to quantitative analysis of receptor-ligand interaction NMR spectra.
Journal of biomolecular NMR, Issue 4, Vol. 29, 491-504
DOI: 10.1023/B:JNMR.0000034351.37982.9e, PubMed: 15243180 |
Antonov AV, Tetko IV, Prokopenko VV, Kosykh D, Mewes HW (2004)
A web portal for classification of expression data using maximal margin linear programming.
Bioinformatics (Oxford, England), Issue 17, Vol. 20, 3284-5
DOI: 10.1093/bioinformatics/bth376, PubMed: 15217811 |
Lingel A, Simon B, Izaurralde E, Sattler M (2004)
NMR assignment of the Drosophila Argonaute2 PAZ domain.
Journal of biomolecular NMR, Issue 3, Vol. 29, 421-2
DOI: 10.1023/B:JNMR.0000032513.15693.04, PubMed: 15213449 |
Münz M, Kieu C, Mack B, Schmitt B, Zeidler R, Gires O (2004)
The carcinoma-associated antigen EpCAM upregulates c-myc and induces cell proliferation.
Oncogene, Issue 34, Vol. 23, 5748-58
DOI: 10.1038/sj.onc.1207610, PubMed: 15195135 |
Walz A, Mack B, Schmitt B, Gires O, Wollenberg B, Zeidler R (2004)
Antitumour effects of a bispecific trivalent antibody in multicellular tumour spheroids.
Anticancer research, Issue 2B, Vol. 24, 887-93
PubMed: 15161042 |
Lingel A, Simon B, Izaurralde E, Sattler M (2004)
Nucleic acid 3'-end recognition by the Argonaute2 PAZ domain.
Nature structural & molecular biology, Issue 6, Vol. 11, 576-7
DOI: 10.1038/nsmb777, PubMed: 15156196 |
Messias AC, Sattler M (2004)
Structural basis of single-stranded RNA recognition.
Accounts of chemical research, Issue 5, Vol. 37, 279-87
DOI: 10.1021/ar030034m, PubMed: 15147168 |
Ventura S, Zurdo J, Narayanan S, Parreño M, Mangues R, Reif B, Chiti F, Giannoni E, Dobson CM, Aviles FX, Serrano L (2004)
Short amino acid stretches can mediate amyloid formation in globular proteins: the Src homology 3 (SH3) case.
Proceedings of the National Academy of Sciences of the United States of America, Issue 19, Vol. 101, 7258-63
DOI: 10.1073/pnas.0308249101, PubMed: 15123800 |
Schlee M, Krug T, Gires O, Zeidler R, Hammerschmidt W, Mailhammer R, Laux G, Sauer G, Lovric J, Bornkamm GW (2004)
Identification of Epstein-Barr virus (EBV) nuclear antigen 2 (EBNA2) target proteins by proteome analysis: activation of EBNA2 in conditionally immortalized B cells reflects early events after infection of primary B cells by EBV.
Journal of virology, Issue 8, Vol. 78, 3941-52
DOI: 10.1128/jvi.78.8.3941-3952.2004, PubMed: 15047810 |
Antonov AV, Tetko IV, Mader MT, Budczies J, Mewes HW (2004)
Optimization models for cancer classification: extracting gene interaction information from microarray expression data.
Bioinformatics (Oxford, England), Issue 5, Vol. 20, 644-52
DOI: 10.1093/bioinformatics/btg462, PubMed: 15033871 |
Mavoungou C, Israel L, Rehm T, Ksiazek D, Krajewski M, Popowicz G, Noegel AA, Schleicher M, Holak TA (2004)
NMR structural characterization of the N-terminal domain of the adenylyl cyclase-associated protein (CAP) from Dictyostelium discoideum.
Journal of biomolecular NMR, Issue 1, Vol. 29, 73-84
DOI: 10.1023/B:JNMR.0000019513.86120.98, PubMed: 15017141 |
Andersson A, Almqvist J, Hagn F, Mäler L (2004)
Diffusion and dynamics of penetratin in different membrane mimicking media.
Biochimica et biophysica acta, Issue 1, Vol. 1661, 18-25
DOI: 10.1016/j.bbamem.2003.11.014, PubMed: 14967471 |
Simon B, Sattler M (2004)
Speeding up biomolecular NMR spectroscopy.
Angewandte Chemie (International ed. in English), Issue 7, Vol. 43, 782-6
DOI: 10.1002/anie.200301680, PubMed: 14767949 |
Dubin G, Popowicz G, Krajewski M, Potempa J, Dubin A, Holak TA (2004)
1H, 15N and 13C NMR resonance assignments of staphostatin A, a specific Staphylococcus aureus cysteine proteinase inhibitor.
Journal of biomolecular NMR, Issue 3, Vol. 28, 295-6
DOI: 10.1023/B:JNMR.0000013681.37659.24, PubMed: 14752262 |
Amininasab M, Elmi MM, Endlich N, Endlich K, Parekh N, Naderi-Manesh H, Schaller J, Mostafavi H, Sattler M, Sarbolouki MN, Muhle-Goll C (2004)
Functional and structural characterization of a novel member of the natriuretic family of peptides from the venom of Pseudocerastes persicus.
FEBS letters, Issue 1-3, Vol. 557, 104-8
DOI: 10.1016/s0014-5793(03)01455-8, PubMed: 14741349 |
Dubin G, Krajewski M, Popowicz G, Stec-Niemczyk J, Bochtler M, Potempa J, Dubin A, Holak TA (2003)
A novel class of cysteine protease inhibitors: solution structure of staphostatin A from Staphylococcus aureus.
Biochemistry, Issue 46, Vol. 42, 13449-56
DOI: 10.1021/bi035310j, PubMed: 14621990 |
Lingel A, Simon B, Izaurralde E, Sattler M (2003)
Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain.
Nature, Issue 6965, Vol. 426, 465-9
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Tetko IV (2003)
The WWW as a tool to obtain molecular parameters.
Mini reviews in medicinal chemistry, Issue 8, Vol. 3, 809-20
DOI: 10.2174/1389557033487638, PubMed: 14529500 |
Gires O, Eskofier S, Lang S, Zeidler R, Münz M (2003)
Cloning and characterisation of a 1.1 kb fragment of the carcinoma-associated epithelial cell adhesion molecule promoter.
Anticancer research, Issue 4, Vol. 23, 3255-61
PubMed: 12926061 |
Narayanan S, Bösl B, Walter S, Reif B (2003)
Importance of low-oligomeric-weight species for prion propagation in the yeast prion system Sup35/Hsp104.
Proceedings of the National Academy of Sciences of the United States of America, Issue 16, Vol. 100, 9286-91
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